Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SNORD65B-201ENST00000459126 73 ntBASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 Y_RNA.709-201ENST00000516952 92 ntBASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 SNORA31.25-201ENST00000517242 134 ntBASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 MIR378D2-201ENST00000580636 98 ntBASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 POLR3GP1-201ENST00000594073 261 ntBASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 MIR3914-2-201ENST00000637339 95 ntBASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CLIP3Q96DZ5 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.59□□□□□ -1.99
CLIP3Q96DZ5 RNU6-235P-201ENST00000362644 107 ntBASIC2.59□□□□□ -1.99
CLIP3Q96DZ5 RNU6-23P-201ENST00000363283 107 ntBASIC2.59□□□□□ -1.99
CLIP3Q96DZ5 RNU6-674P-201ENST00000363831 107 ntBASIC2.59□□□□□ -1.99
CLIP3Q96DZ5 RNA5SP493-201ENST00000364115 91 ntBASIC2.59□□□□□ -1.99
CLIP3Q96DZ5 SNORA25.7-201ENST00000364375 127 ntBASIC2.59□□□□□ -1.99
CLIP3Q96DZ5 RNU6-755P-201ENST00000364400 103 ntBASIC2.59□□□□□ -1.99
CLIP3Q96DZ5 BX510359.4-201ENST00000423750 193 ntBASIC2.59□□□□□ -1.99
CLIP3Q96DZ5 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.59□□□□□ -1.99
CLIP3Q96DZ5 AC096725.1-201ENST00000514266 313 ntBASIC2.59□□□□□ -1.99
CLIP3Q96DZ5 RNU6-589P-201ENST00000516485 107 ntBASIC2.59□□□□□ -1.99
CLIP3Q96DZ5 MIR4529-201ENST00000578110 78 ntBASIC2.59□□□□□ -1.99
CLIP3Q96DZ5 AC005972.2-201ENST00000604690 348 ntBASIC2.59□□□□□ -1.99
CLIP3Q96DZ5 AL356292.1-201ENST00000283110 373 ntBASIC2.58□□□□□ -2
CLIP3Q96DZ5 RNA5SP465-201ENST00000391195 109 ntBASIC2.58□□□□□ -2
CLIP3Q96DZ5 AL135786.1-201ENST00000415892 214 ntBASIC2.58□□□□□ -2
CLIP3Q96DZ5 AC008134.1-201ENST00000420943 193 ntBASIC2.58□□□□□ -2
CLIP3Q96DZ5 RNU6-437P-201ENST00000459408 95 ntBASIC2.58□□□□□ -2
CLIP3Q96DZ5 CYCTP-201ENST00000504253 315 ntBASIC2.58□□□□□ -2
CLIP3Q96DZ5 AC010598.1-201ENST00000510378 103 ntBASIC2.58□□□□□ -2
CLIP3Q96DZ5 MIR3169-201ENST00000578032 83 ntBASIC2.58□□□□□ -2
CLIP3Q96DZ5 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
CLIP3Q96DZ5 RNU6-117P-201ENST00000365415 107 ntBASIC2.57□□□□□ -2
CLIP3Q96DZ5 Y_RNA.584-201ENST00000391090 114 ntBASIC2.57□□□□□ -2
CLIP3Q96DZ5 Y_RNA.587-201ENST00000391210 103 ntBASIC2.57□□□□□ -2
CLIP3Q96DZ5 RNA5SP496-201ENST00000391240 109 ntBASIC2.57□□□□□ -2
CLIP3Q96DZ5 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC2.57□□□□□ -2
CLIP3Q96DZ5 RPS29P6-201ENST00000438196 145 ntBASIC2.57□□□□□ -2
CLIP3Q96DZ5 AL353689.1-201ENST00000438895 199 ntBASIC2.57□□□□□ -2
CLIP3Q96DZ5 AC003982.1-202ENST00000469928 248 ntBASIC2.57□□□□□ -2
CLIP3Q96DZ5 RNU6-772P-201ENST00000516042 105 ntBASIC2.57□□□□□ -2
CLIP3Q96DZ5 RNU6-197P-201ENST00000516680 100 ntBASIC2.57□□□□□ -2
CLIP3Q96DZ5 RNU6-63P-201ENST00000516690 95 ntBASIC2.57□□□□□ -2
CLIP3Q96DZ5 RNU7-116P-201ENST00000516940 62 ntBASIC2.57□□□□□ -2
CLIP3Q96DZ5 RNA5SP402-201ENST00000517148 110 ntBASIC2.57□□□□□ -2
CLIP3Q96DZ5 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.57□□□□□ -2
CLIP3Q96DZ5 AL137847.3-201ENST00000611521 109 ntBASIC2.57□□□□□ -2
CLIP3Q96DZ5 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.57□□□□□ -2
CLIP3Q96DZ5 DEFA7P-201ENST00000382676 285 ntBASIC2.56□□□□□ -2
CLIP3Q96DZ5 RNU11-3P-201ENST00000391111 133 ntBASIC2.56□□□□□ -2
CLIP3Q96DZ5 SNORD23.1-201ENST00000408212 104 ntBASIC2.56□□□□□ -2
CLIP3Q96DZ5 MIR1283-2-201ENST00000408621 87 ntBASIC2.56□□□□□ -2
CLIP3Q96DZ5 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.56□□□□□ -2
CLIP3Q96DZ5 AC245047.4-201ENST00000433189 144 ntBASIC2.56□□□□□ -2
CLIP3Q96DZ5 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.56□□□□□ -2
CLIP3Q96DZ5 RPL23AP54-201ENST00000495129 419 ntBASIC2.56□□□□□ -2
CLIP3Q96DZ5 RN7SL636P-201ENST00000497504 294 ntBASIC2.56□□□□□ -2
CLIP3Q96DZ5 AC025647.1-201ENST00000517879 253 ntBASIC2.56□□□□□ -2
CLIP3Q96DZ5 AL160236.1-201ENST00000556317 195 ntBASIC2.56□□□□□ -2
CLIP3Q96DZ5 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.56□□□□□ -2
CLIP3Q96DZ5 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
CLIP3Q96DZ5 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.56□□□□□ -2
CLIP3Q96DZ5 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
CLIP3Q96DZ5 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
CLIP3Q96DZ5 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CLIP3Q96DZ5 U8.1-201ENST00000362843 134 ntBASIC2.55□□□□□ -2
CLIP3Q96DZ5 RNU6-271P-201ENST00000363858 105 ntBASIC2.55□□□□□ -2
CLIP3Q96DZ5 SNORA80E-201ENST00000384744 137 ntBASIC2.55□□□□□ -2
CLIP3Q96DZ5 RNA5SP511-201ENST00000410487 115 ntBASIC2.55□□□□□ -2
CLIP3Q96DZ5 RNU2-55P-201ENST00000411146 174 ntBASIC2.55□□□□□ -2
CLIP3Q96DZ5 Y_RNA.630-201ENST00000411370 108 ntBASIC2.55□□□□□ -2
CLIP3Q96DZ5 RNA5SP20-201ENST00000515976 84 ntBASIC2.55□□□□□ -2
CLIP3Q96DZ5 RNU2-60P-201ENST00000517290 128 ntBASIC2.55□□□□□ -2
CLIP3Q96DZ5 MTND5P32-201ENST00000560711 1802 ntBASIC2.55□□□□□ -2
CLIP3Q96DZ5 AC015720.1-201ENST00000565251 277 ntBASIC2.55□□□□□ -2
CLIP3Q96DZ5 MIR3121-201ENST00000579680 77 ntBASIC2.55□□□□□ -2
CLIP3Q96DZ5 MIR3613-201ENST00000579844 87 ntBASIC2.55□□□□□ -2
CLIP3Q96DZ5 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
CLIP3Q96DZ5 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.54□□□□□ -2
CLIP3Q96DZ5 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.54□□□□□ -2
CLIP3Q96DZ5 Y_RNA.43-201ENST00000362670 111 ntBASIC2.54□□□□□ -2
CLIP3Q96DZ5 RNU4-41P-201ENST00000364426 143 ntBASIC2.54□□□□□ -2
CLIP3Q96DZ5 RNU6-1240P-201ENST00000365155 104 ntBASIC2.54□□□□□ -2
CLIP3Q96DZ5 AC016909.1-201ENST00000415916 166 ntBASIC2.54□□□□□ -2
CLIP3Q96DZ5 AC060773.1-201ENST00000421698 310 ntBASIC2.54□□□□□ -2
CLIP3Q96DZ5 AL158147.1-201ENST00000443970 75 ntBASIC2.54□□□□□ -2
CLIP3Q96DZ5 AC011406.1-201ENST00000512440 370 ntBASIC2.54□□□□□ -2
CLIP3Q96DZ5 SNORA9.3-201ENST00000516383 129 ntBASIC2.54□□□□□ -2
CLIP3Q96DZ5 AC090142.3-201ENST00000519012 385 ntBASIC2.54□□□□□ -2
CLIP3Q96DZ5 MIR3605-201ENST00000583214 100 ntBASIC2.54□□□□□ -2
CLIP3Q96DZ5 AC078899.2-201ENST00000595282 212 ntBASIC2.54□□□□□ -2
CLIP3Q96DZ5 MIR6895-201ENST00000613497 78 ntBASIC2.54□□□□□ -2
CLIP3Q96DZ5 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
CLIP3Q96DZ5 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.54□□□□□ -2
CLIP3Q96DZ5 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
CLIP3Q96DZ5 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.53□□□□□ -2
CLIP3Q96DZ5 Y_RNA.120-201ENST00000363304 110 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 SNORA6-201ENST00000384033 151 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 Y_RNA.432-201ENST00000384087 111 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 RNA5SP181-201ENST00000410246 98 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.53□□□□□ -2
CLIP3Q96DZ5 AC063976.4-201ENST00000421971 163 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 170.3 ms