Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 AC112771.1-201ENST00000463581 102 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 RPS29P21-201ENST00000496272 170 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.06□□□□□ -2.08
USP43Q70EL4 MIR4648-201ENST00000580107 72 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 AC120024.3-201ENST00000603167 156 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 AC006380.1-201ENST00000603598 186 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 U6.95-201ENST00000636931 70 ntBASIC2.06□□□□□ -2.08
USP43Q70EL4 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
USP43Q70EL4 SNORD32B-201ENST00000364460 84 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 RNU6-1083P-201ENST00000384022 107 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 Y_RNA.456-201ENST00000384232 111 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 MIRLET7F2-201ENST00000385277 83 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 MIR1302-4-201ENST00000408701 150 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 RNU6-383P-201ENST00000410864 94 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 Y_RNA.617-201ENST00000410920 90 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 TOMM22P2-201ENST00000430735 237 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.05□□□□□ -2.08
USP43Q70EL4 Y_RNA.651-201ENST00000459380 103 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 RNA5SP320-201ENST00000516263 124 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 RNU2-44P-201ENST00000516795 194 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 RNU2-60P-201ENST00000517290 128 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 AC027176.1-201ENST00000560204 514 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 MIR5006-201ENST00000583027 110 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 U6.115-201ENST00000636045 103 ntBASIC2.05□□□□□ -2.08
USP43Q70EL4 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.05□□□□□ -2.08
USP43Q70EL4 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.05□□□□□ -2.08
USP43Q70EL4 AC016717.2-201ENST00000609089 5141 ntBASIC2.04□□□□□ -2.08
USP43Q70EL4 AL359851.1-201ENST00000569460 4997 ntBASIC2.04□□□□□ -2.08
USP43Q70EL4 snoU2_19.1-201ENST00000362361 80 ntBASIC2.04□□□□□ -2.08
USP43Q70EL4 RNU6-508P-201ENST00000363231 103 ntBASIC2.04□□□□□ -2.08
USP43Q70EL4 U3.8-201ENST00000363675 217 ntBASIC2.04□□□□□ -2.08
USP43Q70EL4 Y_RNA.495-201ENST00000384435 112 ntBASIC2.04□□□□□ -2.08
USP43Q70EL4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.04□□□□□ -2.08
USP43Q70EL4 Z98742.2-201ENST00000431564 187 ntBASIC2.04□□□□□ -2.08
USP43Q70EL4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
USP43Q70EL4 RPL36AP48-201ENST00000485521 314 ntBASIC2.04□□□□□ -2.08
USP43Q70EL4 AC023141.11-201ENST00000508864 202 ntBASIC2.04□□□□□ -2.08
USP43Q70EL4 RNU6-107P-201ENST00000516643 102 ntBASIC2.04□□□□□ -2.08
USP43Q70EL4 RNU1-40P-201ENST00000516816 164 ntBASIC2.04□□□□□ -2.08
USP43Q70EL4 RNU1-97P-201ENST00000516872 164 ntBASIC2.04□□□□□ -2.08
USP43Q70EL4 MIR1291-201ENST00000627649 87 ntBASIC2.04□□□□□ -2.08
USP43Q70EL4 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
USP43Q70EL4 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
USP43Q70EL4 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.03□□□□□ -2.08
USP43Q70EL4 U8.1-201ENST00000362843 134 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 RNU6-1205P-201ENST00000363625 106 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 RNU6-978P-201ENST00000364371 103 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 SNORD73B-201ENST00000364394 72 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 Y_RNA.341-201ENST00000365341 102 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 RNU6-728P-201ENST00000365375 104 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 RNU6-144P-201ENST00000383951 107 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 Y_RNA.521-201ENST00000384560 114 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 MIR518C-201ENST00000384822 101 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 SNORA12-201ENST00000391162 147 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 AL359511.1-201ENST00000402970 211 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 AC097463.2-201ENST00000421074 142 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 AC003685.2-201ENST00000422795 395 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.03□□□□□ -2.08
USP43Q70EL4 EIF4EP4-201ENST00000424916 578 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 snoU13.23-201ENST00000458863 104 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 RN7SL636P-201ENST00000497504 294 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.03□□□□□ -2.08
USP43Q70EL4 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.03□□□□□ -2.08
USP43Q70EL4 DEFB122-202ENST00000569013 197 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 RPL17P51-201ENST00000605218 238 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 SNORD14A-201ENST00000606526 91 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 MIR6766-201ENST00000622641 72 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 MIR7157-201ENST00000635801 60 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 AC068647.2-201ENST00000637380 353 ntBASIC2.03□□□□□ -2.08
USP43Q70EL4 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
USP43Q70EL4 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.03□□□□□ -2.09
USP43Q70EL4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.02□□□□□ -2.09
USP43Q70EL4 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.02□□□□□ -2.09
USP43Q70EL4 MIR450A1-201ENST00000362262 91 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 Y_RNA.114-201ENST00000363265 113 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 Y_RNA.116-201ENST00000363292 103 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 SNORD45.3-201ENST00000363836 72 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 SNORD58C-201ENST00000365223 64 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 RNY3P5-201ENST00000384127 102 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 RNU6-905P-201ENST00000384434 107 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 SNORD116-21-201ENST00000384507 92 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 MIR548B-201ENST00000385247 97 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 Y_RNA.584-201ENST00000391090 114 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 RNU6-855P-201ENST00000410395 104 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 RNU6-710P-201ENST00000410424 105 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 RN7SKP223-201ENST00000410582 62 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 RNU2-40P-201ENST00000410833 196 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 MICF-203ENST00000432679 129 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 AC025033.1-201ENST00000463883 194 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 RNU6-781P-201ENST00000516377 101 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 RNU1-117P-201ENST00000517041 158 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 MIR1273D-201ENST00000577266 86 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 MIR4724-201ENST00000579485 89 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 MIR378D2-201ENST00000580636 98 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
USP43Q70EL4 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.02□□□□□ -2.09
USP43Q70EL4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
USP43Q70EL4 AC008555.8-201ENST00000623602 2168 ntBASIC2.02□□□□□ -2.09
USP43Q70EL4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 185.1 ms