Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 Y_RNA.374-201ENST00000365606 101 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 AC104389.3-201ENST00000445629 235 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 RNU2-34P-201ENST00000516534 121 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 RPL23AP91-201ENST00000569211 455 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 Y_RNA.757-201ENST00000578934 114 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 MIR3121-201ENST00000579680 77 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 AL929325.1-201ENST00000603096 117 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 AC012531.5-201ENST00000611375 151 ntBASIC2.41□□□□□ -2.02
COL4A3Q01955 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
COL4A3Q01955 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
COL4A3Q01955 Y_RNA.294-201ENST00000364916 102 ntBASIC2.4□□□□□ -2.03
COL4A3Q01955 SNORD18B-201ENST00000365659 72 ntBASIC2.4□□□□□ -2.03
COL4A3Q01955 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC2.4□□□□□ -2.03
COL4A3Q01955 AL161788.1-201ENST00000441805 169 ntBASIC2.4□□□□□ -2.03
COL4A3Q01955 RNU7-107P-201ENST00000459121 61 ntBASIC2.4□□□□□ -2.03
COL4A3Q01955 AC090515.1-201ENST00000465295 476 ntBASIC2.4□□□□□ -2.03
COL4A3Q01955 AL021707.8-201ENST00000609428 183 ntBASIC2.4□□□□□ -2.03
COL4A3Q01955 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.4□□□□□ -2.03
COL4A3Q01955 Pinc.1-201ENST00000616452 154 ntBASIC2.4□□□□□ -2.03
COL4A3Q01955 MIR6873-201ENST00000622788 63 ntBASIC2.4□□□□□ -2.03
COL4A3Q01955 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
COL4A3Q01955 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
COL4A3Q01955 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
COL4A3Q01955 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
COL4A3Q01955 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
COL4A3Q01955 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
COL4A3Q01955 RNU6-1336P-201ENST00000383886 109 ntBASIC2.39□□□□□ -2.03
COL4A3Q01955 Y_RNA.525-201ENST00000384570 113 ntBASIC2.39□□□□□ -2.03
COL4A3Q01955 MIR218-1-201ENST00000384999 110 ntBASIC2.39□□□□□ -2.03
COL4A3Q01955 SNORA17.3-201ENST00000391159 129 ntBASIC2.39□□□□□ -2.03
COL4A3Q01955 RNU2-70P-201ENST00000410718 179 ntBASIC2.39□□□□□ -2.03
COL4A3Q01955 RNU2-32P-201ENST00000411193 191 ntBASIC2.39□□□□□ -2.03
COL4A3Q01955 AC108667.1-201ENST00000428618 249 ntBASIC2.39□□□□□ -2.03
COL4A3Q01955 RNA5SP153-201ENST00000516498 76 ntBASIC2.39□□□□□ -2.03
COL4A3Q01955 RNU7-172P-201ENST00000517125 64 ntBASIC2.39□□□□□ -2.03
COL4A3Q01955 MIR3117-201ENST00000584034 78 ntBASIC2.39□□□□□ -2.03
COL4A3Q01955 MIR4438-201ENST00000585271 93 ntBASIC2.39□□□□□ -2.03
COL4A3Q01955 AC002064.3-201ENST00000623448 346 ntBASIC2.39□□□□□ -2.03
COL4A3Q01955 MIR7157-201ENST00000635801 60 ntBASIC2.39□□□□□ -2.03
COL4A3Q01955 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.39□□□□□ -2.03
COL4A3Q01955 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
COL4A3Q01955 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
COL4A3Q01955 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
COL4A3Q01955 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
COL4A3Q01955 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
COL4A3Q01955 RNU6-235P-201ENST00000362644 107 ntBASIC2.38□□□□□ -2.03
COL4A3Q01955 U8.1-201ENST00000362843 134 ntBASIC2.38□□□□□ -2.03
COL4A3Q01955 SNORD6-201ENST00000365444 73 ntBASIC2.38□□□□□ -2.03
COL4A3Q01955 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.38□□□□□ -2.03
COL4A3Q01955 RNU6-1064P-201ENST00000410626 104 ntBASIC2.38□□□□□ -2.03
COL4A3Q01955 PDCD5P2-201ENST00000507570 312 ntBASIC2.38□□□□□ -2.03
COL4A3Q01955 AC093259.1-201ENST00000509755 300 ntBASIC2.38□□□□□ -2.03
COL4A3Q01955 RNA5SP490-201ENST00000517141 136 ntBASIC2.38□□□□□ -2.03
COL4A3Q01955 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.38□□□□□ -2.03
COL4A3Q01955 AL160236.1-201ENST00000556317 195 ntBASIC2.38□□□□□ -2.03
COL4A3Q01955 MIR6766-201ENST00000622641 72 ntBASIC2.38□□□□□ -2.03
COL4A3Q01955 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC2.38□□□□□ -2.03
COL4A3Q01955 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.38□□□□□ -2.03
COL4A3Q01955 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
COL4A3Q01955 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.38□□□□□ -2.03
COL4A3Q01955 AL353746.1-201ENST00000566293 6881 ntBASIC2.38□□□□□ -2.03
COL4A3Q01955 RNU1-72P-201ENST00000362976 153 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 RNU1-17P-201ENST00000363022 152 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 Y_RNA.203-201ENST00000364106 102 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 RNU6-153P-201ENST00000364422 104 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 RNU1-91P-201ENST00000364746 163 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 CD24P4-201ENST00000382840 243 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 RNU1-101P-201ENST00000391171 127 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 SNORA26-201ENST00000391286 122 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 MIR1253-201ENST00000408273 105 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 POLR2J4-204ENST00000418424 324 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.37□□□□□ -2.03
COL4A3Q01955 AC097462.1-201ENST00000514125 324 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 AC011604.1-201ENST00000545978 196 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.37□□□□□ -2.03
COL4A3Q01955 AC131055.1-201ENST00000584626 316 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 MIR6845-201ENST00000613182 61 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 RNU6-743P-201ENST00000364151 106 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 Y_RNA.224-201ENST00000364308 111 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 Y_RNA.634-201ENST00000364811 113 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 SNORD21-201ENST00000383953 95 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 AC016909.1-201ENST00000415916 166 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 MTCO1P44-201ENST00000441935 243 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 RPS4XP11-201ENST00000446897 772 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 AC245102.2-201ENST00000448956 180 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 AC133485.4-201ENST00000561835 220 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 AC138907.4-201ENST00000570107 226 ntBASIC2.37□□□□□ -2.03
COL4A3Q01955 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
COL4A3Q01955 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL4A3Q01955 AC138915.1-201ENST00000565427 1685 ntBASIC2.36□□□□□ -2.03
COL4A3Q01955 Y_RNA.120-201ENST00000363304 110 ntBASIC2.36□□□□□ -2.03
COL4A3Q01955 RNU6-1209P-201ENST00000363655 107 ntBASIC2.36□□□□□ -2.03
COL4A3Q01955 RNU6-1144P-201ENST00000384247 104 ntBASIC2.36□□□□□ -2.03
COL4A3Q01955 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.36□□□□□ -2.03
COL4A3Q01955 AL357134.1-201ENST00000445848 426 ntBASIC2.36□□□□□ -2.03
COL4A3Q01955 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.36□□□□□ -2.03
COL4A3Q01955 SNORD77.4-201ENST00000516158 81 ntBASIC2.36□□□□□ -2.03
COL4A3Q01955 MIR3199-1-201ENST00000582434 88 ntBASIC2.36□□□□□ -2.03
COL4A3Q01955 AC067747.1-201ENST00000608026 250 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms