Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.25□□□□□ -1.89
MSX1P28360 HSPE1P19-201ENST00000603327 295 ntBASIC3.25□□□□□ -1.89
MSX1P28360 FAM71BP1-201ENST00000604431 523 ntBASIC3.25□□□□□ -1.89
MSX1P28360 AL355297.2-201ENST00000604792 129 ntBASIC3.25□□□□□ -1.89
MSX1P28360 MIR7153-201ENST00000637758 57 ntBASIC3.25□□□□□ -1.89
MSX1P28360 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.25□□□□□ -1.89
MSX1P28360 ICE2P2-201ENST00000483823 2787 ntBASIC3.25□□□□□ -1.89
MSX1P28360 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
MSX1P28360 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
MSX1P28360 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
MSX1P28360 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
MSX1P28360 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
MSX1P28360 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
MSX1P28360 RNU6-283P-201ENST00000364788 107 ntBASIC3.24□□□□□ -1.89
MSX1P28360 SNORA80E-201ENST00000384744 137 ntBASIC3.24□□□□□ -1.89
MSX1P28360 MIR490-201ENST00000384865 128 ntBASIC3.24□□□□□ -1.89
MSX1P28360 RNA5SP482-201ENST00000391269 118 ntBASIC3.24□□□□□ -1.89
MSX1P28360 AC113410.1-201ENST00000505029 247 ntBASIC3.24□□□□□ -1.89
MSX1P28360 AC078899.2-201ENST00000595282 212 ntBASIC3.24□□□□□ -1.89
MSX1P28360 AC087741.2-201ENST00000619415 172 ntBASIC3.24□□□□□ -1.89
MSX1P28360 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
MSX1P28360 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
MSX1P28360 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
MSX1P28360 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.24□□□□□ -1.89
MSX1P28360 PWAR6-201ENST00000552334 4618 ntBASIC3.24□□□□□ -1.89
MSX1P28360 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
MSX1P28360 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
MSX1P28360 SNORD114-6-201ENST00000364393 72 ntBASIC3.23□□□□□ -1.89
MSX1P28360 RNU4-16P-201ENST00000364737 141 ntBASIC3.23□□□□□ -1.89
MSX1P28360 Y_RNA.531-201ENST00000384589 121 ntBASIC3.23□□□□□ -1.89
MSX1P28360 SRIP3-201ENST00000413200 219 ntBASIC3.23□□□□□ -1.89
MSX1P28360 TRIAP1P1-201ENST00000427062 225 ntBASIC3.23□□□□□ -1.89
MSX1P28360 AC018868.1-201ENST00000491307 315 ntBASIC3.23□□□□□ -1.89
MSX1P28360 RN7SKP57-201ENST00000517248 293 ntBASIC3.23□□□□□ -1.89
MSX1P28360 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.23□□□□□ -1.89
MSX1P28360 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
MSX1P28360 RNU6-661P-201ENST00000362409 107 ntBASIC3.22□□□□□ -1.89
MSX1P28360 RNU1-33P-201ENST00000364249 162 ntBASIC3.22□□□□□ -1.89
MSX1P28360 CD24P4-201ENST00000382840 243 ntBASIC3.22□□□□□ -1.89
MSX1P28360 CST2P1-201ENST00000425770 87 ntBASIC3.22□□□□□ -1.89
MSX1P28360 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.22□□□□□ -1.89
MSX1P28360 AC006539.3-201ENST00000454258 129 ntBASIC3.22□□□□□ -1.89
MSX1P28360 MIR3618-201ENST00000580330 88 ntBASIC3.22□□□□□ -1.89
MSX1P28360 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.22□□□□□ -1.89
MSX1P28360 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.22□□□□□ -1.89
MSX1P28360 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
MSX1P28360 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.22□□□□□ -1.89
MSX1P28360 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
MSX1P28360 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.22□□□□□ -1.89
MSX1P28360 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
MSX1P28360 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
MSX1P28360 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
MSX1P28360 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
MSX1P28360 Y_RNA.99-201ENST00000363138 105 ntBASIC3.21□□□□□ -1.9
MSX1P28360 RN7SKP111-201ENST00000410349 271 ntBASIC3.21□□□□□ -1.9
MSX1P28360 RN7SKP200-201ENST00000410564 320 ntBASIC3.21□□□□□ -1.9
MSX1P28360 RNA5SP144-201ENST00000410846 116 ntBASIC3.21□□□□□ -1.9
MSX1P28360 TRBV12-1-201ENST00000479785 344 ntBASIC3.21□□□□□ -1.9
MSX1P28360 AC092185.1-201ENST00000491371 97 ntBASIC3.21□□□□□ -1.9
MSX1P28360 RNU7-61P-201ENST00000515897 61 ntBASIC3.21□□□□□ -1.9
MSX1P28360 IGHVII-40-1-201ENST00000517316 58 ntBASIC3.21□□□□□ -1.9
MSX1P28360 MIR4694-201ENST00000578534 80 ntBASIC3.21□□□□□ -1.9
MSX1P28360 SCARNA15.3-201ENST00000626315 122 ntBASIC3.21□□□□□ -1.9
MSX1P28360 SCARNA4.1-201ENST00000628597 123 ntBASIC3.21□□□□□ -1.9
MSX1P28360 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.21□□□□□ -1.9
MSX1P28360 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
MSX1P28360 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
MSX1P28360 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.21□□□□□ -1.9
MSX1P28360 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
MSX1P28360 MIR342-201ENST00000362212 99 ntBASIC3.2□□□□□ -1.9
MSX1P28360 RNU6-228P-201ENST00000362700 106 ntBASIC3.2□□□□□ -1.9
MSX1P28360 RNU6-363P-201ENST00000362895 105 ntBASIC3.2□□□□□ -1.9
MSX1P28360 MIR184-201ENST00000384962 84 ntBASIC3.2□□□□□ -1.9
MSX1P28360 AC096949.1-201ENST00000412047 152 ntBASIC3.2□□□□□ -1.9
MSX1P28360 SNX2P2-201ENST00000424553 323 ntBASIC3.2□□□□□ -1.9
MSX1P28360 AL035398.1-201ENST00000430869 322 ntBASIC3.2□□□□□ -1.9
MSX1P28360 RN7SL297P-201ENST00000483161 293 ntBASIC3.2□□□□□ -1.9
MSX1P28360 RPS23P4-201ENST00000487908 423 ntBASIC3.2□□□□□ -1.9
MSX1P28360 RNU7-28P-201ENST00000516759 62 ntBASIC3.2□□□□□ -1.9
MSX1P28360 AC026333.2-201ENST00000542164 106 ntBASIC3.2□□□□□ -1.9
MSX1P28360 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.2□□□□□ -1.9
MSX1P28360 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.2□□□□□ -1.9
MSX1P28360 MIR4738-201ENST00000579134 87 ntBASIC3.2□□□□□ -1.9
MSX1P28360 RNVU1-4-201ENST00000612985 164 ntBASIC3.2□□□□□ -1.9
MSX1P28360 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
MSX1P28360 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.2□□□□□ -1.9
MSX1P28360 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
MSX1P28360 MAPK10-362ENST00000641864 4484 ntBASIC3.19□□□□□ -1.9
MSX1P28360 SNORD115-19-201ENST00000363098 82 ntBASIC3.19□□□□□ -1.9
MSX1P28360 SNORD115-18-201ENST00000363293 82 ntBASIC3.19□□□□□ -1.9
MSX1P28360 Y_RNA.155-201ENST00000363632 101 ntBASIC3.19□□□□□ -1.9
MSX1P28360 RNY1P1-201ENST00000364372 112 ntBASIC3.19□□□□□ -1.9
MSX1P28360 SNORD115-17-201ENST00000364612 82 ntBASIC3.19□□□□□ -1.9
MSX1P28360 RNU6-1124P-201ENST00000384169 107 ntBASIC3.19□□□□□ -1.9
MSX1P28360 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.19□□□□□ -1.9
MSX1P28360 RNA5SP120-201ENST00000410900 112 ntBASIC3.19□□□□□ -1.9
MSX1P28360 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.19□□□□□ -1.9
MSX1P28360 AC004941.2-201ENST00000427009 228 ntBASIC3.19□□□□□ -1.9
MSX1P28360 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.19□□□□□ -1.9
MSX1P28360 AC006483.1-201ENST00000487308 313 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms