Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
CBX4O00257 MIR4446-201ENST00000578505 67 ntBASIC2.45□□□□□ -2.02
CBX4O00257 AC046143.2-201ENST00000609789 160 ntBASIC2.45□□□□□ -2.02
CBX4O00257 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.45□□□□□ -2.02
CBX4O00257 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
CBX4O00257 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
CBX4O00257 RNU6-1209P-201ENST00000363655 107 ntBASIC2.44□□□□□ -2.02
CBX4O00257 RNU6-312P-201ENST00000364629 107 ntBASIC2.44□□□□□ -2.02
CBX4O00257 MIR764-201ENST00000390811 85 ntBASIC2.44□□□□□ -2.02
CBX4O00257 PCNPP3-201ENST00000393579 471 ntBASIC2.44□□□□□ -2.02
CBX4O00257 MIR1278-201ENST00000408753 81 ntBASIC2.44□□□□□ -2.02
CBX4O00257 RNA5SP501-201ENST00000410990 112 ntBASIC2.44□□□□□ -2.02
CBX4O00257 AC245047.4-201ENST00000433189 144 ntBASIC2.44□□□□□ -2.02
CBX4O00257 HMGN1P7-201ENST00000491722 313 ntBASIC2.44□□□□□ -2.02
CBX4O00257 RNVU1-2-201ENST00000516326 135 ntBASIC2.44□□□□□ -2.02
CBX4O00257 Y_RNA.714-201ENST00000517065 90 ntBASIC2.44□□□□□ -2.02
CBX4O00257 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.44□□□□□ -2.02
CBX4O00257 AC022217.4-201ENST00000604389 163 ntBASIC2.44□□□□□ -2.02
CBX4O00257 AC108706.1-201ENST00000611053 297 ntBASIC2.44□□□□□ -2.02
CBX4O00257 MIR1291-201ENST00000627649 87 ntBASIC2.44□□□□□ -2.02
CBX4O00257 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CBX4O00257 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
CBX4O00257 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
CBX4O00257 Y_RNA.23-201ENST00000362496 106 ntBASIC2.43□□□□□ -2.02
CBX4O00257 RNU6-728P-201ENST00000365375 104 ntBASIC2.43□□□□□ -2.02
CBX4O00257 Y_RNA.464-201ENST00000384282 110 ntBASIC2.43□□□□□ -2.02
CBX4O00257 MT-TT-201ENST00000387460 66 ntBASIC2.43□□□□□ -2.02
CBX4O00257 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
CBX4O00257 RNA5SP109-201ENST00000391010 116 ntBASIC2.43□□□□□ -2.02
CBX4O00257 RNA5SP425-201ENST00000410336 112 ntBASIC2.43□□□□□ -2.02
CBX4O00257 RN7SKP51-201ENST00000410781 304 ntBASIC2.43□□□□□ -2.02
CBX4O00257 RNU2-7P-201ENST00000410794 178 ntBASIC2.43□□□□□ -2.02
CBX4O00257 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.43□□□□□ -2.02
CBX4O00257 AC074198.2-201ENST00000508153 258 ntBASIC2.43□□□□□ -2.02
CBX4O00257 AC109810.1-201ENST00000534066 224 ntBASIC2.43□□□□□ -2.02
CBX4O00257 AC103810.6-201ENST00000606708 136 ntBASIC2.43□□□□□ -2.02
CBX4O00257 FO624990.1-201ENST00000636373 85 ntBASIC2.43□□□□□ -2.02
CBX4O00257 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.43□□□□□ -2.02
CBX4O00257 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
CBX4O00257 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.42□□□□□ -2.02
CBX4O00257 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.42□□□□□ -2.02
CBX4O00257 Y_RNA.796-201ENST00000364268 102 ntBASIC2.42□□□□□ -2.02
CBX4O00257 Y_RNA.253-201ENST00000364562 112 ntBASIC2.42□□□□□ -2.02
CBX4O00257 Y_RNA.265-201ENST00000364677 108 ntBASIC2.42□□□□□ -2.02
CBX4O00257 SNORA67.1-201ENST00000364749 141 ntBASIC2.42□□□□□ -2.02
CBX4O00257 Y_RNA.799-201ENST00000364992 102 ntBASIC2.42□□□□□ -2.02
CBX4O00257 Y_RNA.357-201ENST00000365487 109 ntBASIC2.42□□□□□ -2.02
CBX4O00257 RNU6-1062P-201ENST00000383908 107 ntBASIC2.42□□□□□ -2.02
CBX4O00257 RNU6-950P-201ENST00000384651 107 ntBASIC2.42□□□□□ -2.02
CBX4O00257 MIR520A-201ENST00000384862 85 ntBASIC2.42□□□□□ -2.02
CBX4O00257 Y_RNA.587-201ENST00000391210 103 ntBASIC2.42□□□□□ -2.02
CBX4O00257 RNA5SP450-201ENST00000411206 102 ntBASIC2.42□□□□□ -2.02
CBX4O00257 SNRPGP10-201ENST00000432323 225 ntBASIC2.42□□□□□ -2.02
CBX4O00257 AL121914.1-201ENST00000450188 156 ntBASIC2.42□□□□□ -2.02
CBX4O00257 MIR4648-201ENST00000580107 72 ntBASIC2.42□□□□□ -2.02
CBX4O00257 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.42□□□□□ -2.02
CBX4O00257 AL021707.8-201ENST00000609428 183 ntBASIC2.42□□□□□ -2.02
CBX4O00257 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CBX4O00257 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
CBX4O00257 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
CBX4O00257 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.41□□□□□ -2.02
CBX4O00257 MIR126-201ENST00000362291 85 ntBASIC2.41□□□□□ -2.02
CBX4O00257 SNORD23.1-201ENST00000408212 104 ntBASIC2.41□□□□□ -2.02
CBX4O00257 RNA5SP181-201ENST00000410246 98 ntBASIC2.41□□□□□ -2.02
CBX4O00257 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
CBX4O00257 AL606517.2-201ENST00000442855 241 ntBASIC2.41□□□□□ -2.02
CBX4O00257 RPS27P1-201ENST00000450552 247 ntBASIC2.41□□□□□ -2.02
CBX4O00257 AC005840.1-201ENST00000498412 377 ntBASIC2.41□□□□□ -2.02
CBX4O00257 RNU7-28P-201ENST00000516759 62 ntBASIC2.41□□□□□ -2.02
CBX4O00257 IGKV3-31-201ENST00000523109 329 ntBASIC2.41□□□□□ -2.02
CBX4O00257 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.41□□□□□ -2.02
CBX4O00257 AL049861.1-201ENST00000603130 150 ntBASIC2.41□□□□□ -2.02
CBX4O00257 uc_338.4-201ENST00000616635 176 ntBASIC2.41□□□□□ -2.02
CBX4O00257 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.41□□□□□ -2.02
CBX4O00257 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
CBX4O00257 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.4□□□□□ -2.02
CBX4O00257 MIR6073-201ENST00000352083 89 ntBASIC2.4□□□□□ -2.03
CBX4O00257 RNA5SP482-201ENST00000391269 118 ntBASIC2.4□□□□□ -2.03
CBX4O00257 RN7SKP192-201ENST00000411291 327 ntBASIC2.4□□□□□ -2.03
CBX4O00257 SNORD11-201ENST00000459124 84 ntBASIC2.4□□□□□ -2.03
CBX4O00257 RNA5SP281-201ENST00000516504 135 ntBASIC2.4□□□□□ -2.03
CBX4O00257 RNU2-19P-201ENST00000517288 84 ntBASIC2.4□□□□□ -2.03
CBX4O00257 SUB1P4-201ENST00000566062 339 ntBASIC2.4□□□□□ -2.03
CBX4O00257 SNORA28-201ENST00000606769 126 ntBASIC2.4□□□□□ -2.03
CBX4O00257 AC067747.1-201ENST00000608026 250 ntBASIC2.4□□□□□ -2.03
CBX4O00257 AL591926.4-201ENST00000616895 298 ntBASIC2.4□□□□□ -2.03
CBX4O00257 MIR8054-201ENST00000620877 86 ntBASIC2.4□□□□□ -2.03
CBX4O00257 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.4□□□□□ -2.03
CBX4O00257 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.4□□□□□ -2.03
CBX4O00257 AC016717.2-201ENST00000609089 5141 ntBASIC2.39□□□□□ -2.03
CBX4O00257 RNA5SP393-201ENST00000363423 117 ntBASIC2.39□□□□□ -2.03
CBX4O00257 SNORA63D-201ENST00000364359 132 ntBASIC2.39□□□□□ -2.03
CBX4O00257 Y_RNA.441-201ENST00000384123 112 ntBASIC2.39□□□□□ -2.03
CBX4O00257 MIR15B-201ENST00000385045 98 ntBASIC2.39□□□□□ -2.03
CBX4O00257 RNU6-440P-201ENST00000390882 105 ntBASIC2.39□□□□□ -2.03
CBX4O00257 SNORA79-201ENST00000408376 140 ntBASIC2.39□□□□□ -2.03
CBX4O00257 RN7SKP200-201ENST00000410564 320 ntBASIC2.39□□□□□ -2.03
CBX4O00257 MLLT10P1-201ENST00000418346 262 ntBASIC2.39□□□□□ -2.03
CBX4O00257 AC012640.5-201ENST00000623897 319 ntBASIC2.39□□□□□ -2.03
CBX4O00257 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms