Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL158823.1-201ENST00000418441 478 ntBASIC2.47□□□□□ -2.01
CCDC140Q96MF4 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC140Q96MF4 RNA5SP217-201ENST00000515959 91 ntBASIC2.47□□□□□ -2.01
CCDC140Q96MF4 AC007751.1-201ENST00000529260 376 ntBASIC2.47□□□□□ -2.01
CCDC140Q96MF4 MIR548AI-201ENST00000579940 88 ntBASIC2.47□□□□□ -2.01
CCDC140Q96MF4 SNORA28-201ENST00000606769 126 ntBASIC2.47□□□□□ -2.01
CCDC140Q96MF4 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC140Q96MF4 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.47□□□□□ -2.01
CCDC140Q96MF4 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC140Q96MF4 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC140Q96MF4 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC140Q96MF4 RNA5SP383-201ENST00000362934 120 ntBASIC2.46□□□□□ -2.02
CCDC140Q96MF4 RNU6-915P-201ENST00000364943 103 ntBASIC2.46□□□□□ -2.02
CCDC140Q96MF4 RNU6-163P-201ENST00000384396 106 ntBASIC2.46□□□□□ -2.02
CCDC140Q96MF4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC140Q96MF4 AC105272.1-201ENST00000438604 198 ntBASIC2.46□□□□□ -2.02
CCDC140Q96MF4 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC140Q96MF4 SNRPGP13-201ENST00000442212 177 ntBASIC2.46□□□□□ -2.02
CCDC140Q96MF4 BX510359.1-201ENST00000456973 237 ntBASIC2.46□□□□□ -2.02
CCDC140Q96MF4 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.46□□□□□ -2.02
CCDC140Q96MF4 RNU6-62P-201ENST00000516526 102 ntBASIC2.46□□□□□ -2.02
CCDC140Q96MF4 MIR5194-201ENST00000582634 120 ntBASIC2.46□□□□□ -2.02
CCDC140Q96MF4 MIR4762-201ENST00000585261 75 ntBASIC2.46□□□□□ -2.02
CCDC140Q96MF4 TUG1_4.1-201ENST00000619464 181 ntBASIC2.46□□□□□ -2.02
CCDC140Q96MF4 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC140Q96MF4 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC140Q96MF4 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
CCDC140Q96MF4 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC140Q96MF4 Y_RNA.242-201ENST00000364473 110 ntBASIC2.45□□□□□ -2.02
CCDC140Q96MF4 RNU6-442P-201ENST00000383968 104 ntBASIC2.45□□□□□ -2.02
CCDC140Q96MF4 RNU6-22P-201ENST00000384355 107 ntBASIC2.45□□□□□ -2.02
CCDC140Q96MF4 SNORA80E-201ENST00000384744 137 ntBASIC2.45□□□□□ -2.02
CCDC140Q96MF4 MIR520A-201ENST00000384862 85 ntBASIC2.45□□□□□ -2.02
CCDC140Q96MF4 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC140Q96MF4 AC114811.1-201ENST00000507207 168 ntBASIC2.45□□□□□ -2.02
CCDC140Q96MF4 RNU5E-3P-201ENST00000515913 68 ntBASIC2.45□□□□□ -2.02
CCDC140Q96MF4 RNU6-1234P-201ENST00000516877 103 ntBASIC2.45□□□□□ -2.02
CCDC140Q96MF4 AL365222.1-201ENST00000614661 98 ntBASIC2.45□□□□□ -2.02
CCDC140Q96MF4 MIR7112-201ENST00000616126 65 ntBASIC2.45□□□□□ -2.02
CCDC140Q96MF4 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC140Q96MF4 AL136360.1-201ENST00000503377 1900 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC140Q96MF4 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
CCDC140Q96MF4 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
CCDC140Q96MF4 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.44□□□□□ -2.02
CCDC140Q96MF4 U8.1-201ENST00000362843 134 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 U8.5-201ENST00000364528 136 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 RNU6-805P-201ENST00000365643 106 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 SNORD18B-201ENST00000365659 72 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 RNU6-1154P-201ENST00000391001 104 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 AL034345.1-201ENST00000407768 123 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 RNA5SP120-201ENST00000410900 112 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 AC007064.1-201ENST00000412238 351 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 RPL32P35-201ENST00000415214 394 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 RN7SL863P-201ENST00000462370 296 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 RN7SL20P-201ENST00000488827 297 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 RPL23AP63-201ENST00000498752 471 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 Y_RNA.686-201ENST00000516548 134 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 RNA5SP437-201ENST00000517249 129 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 SUB1P4-201ENST00000566062 339 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 MIR5680-201ENST00000577577 84 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 AC131055.1-201ENST00000584626 316 ntBASIC2.44□□□□□ -2.02
CCDC140Q96MF4 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC140Q96MF4 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC140Q96MF4 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC140Q96MF4 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC140Q96MF4 RNU6-112P-201ENST00000363599 104 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 SNORA38.1-201ENST00000364172 131 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 SNORA63D-201ENST00000364359 132 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 MIR539-201ENST00000365690 78 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 SNORD24-201ENST00000383884 75 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 SNORA7.4-201ENST00000384249 137 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 RNU6-1081P-201ENST00000384537 107 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 RNA5SP293-201ENST00000410527 113 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 RNU4-47P-201ENST00000410876 114 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 RNA5SP127-201ENST00000411051 133 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 Z92545.1-201ENST00000411782 234 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 CALM2P4-201ENST00000430810 426 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 SNORA31.25-201ENST00000517242 134 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 RN7SKP57-201ENST00000517248 293 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 MIR4529-201ENST00000578110 78 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 AP001340.1-201ENST00000624405 217 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 MIR3651-201ENST00000630427 90 ntBASIC2.43□□□□□ -2.02
CCDC140Q96MF4 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
CCDC140Q96MF4 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC140Q96MF4 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC140Q96MF4 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC140Q96MF4 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC140Q96MF4 Y_RNA.71-201ENST00000362892 104 ntBASIC2.42□□□□□ -2.02
CCDC140Q96MF4 RNU6-888P-201ENST00000363010 101 ntBASIC2.42□□□□□ -2.02
CCDC140Q96MF4 RNU6-268P-201ENST00000364174 107 ntBASIC2.42□□□□□ -2.02
CCDC140Q96MF4 Y_RNA.294-201ENST00000364916 102 ntBASIC2.42□□□□□ -2.02
CCDC140Q96MF4 RNU1-51P-201ENST00000365345 176 ntBASIC2.42□□□□□ -2.02
CCDC140Q96MF4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
CCDC140Q96MF4 RNA5SP450-201ENST00000411206 102 ntBASIC2.42□□□□□ -2.02
CCDC140Q96MF4 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC140Q96MF4 RNU7-34P-201ENST00000459394 64 ntBASIC2.42□□□□□ -2.02
CCDC140Q96MF4 RNA5SP380-201ENST00000517190 98 ntBASIC2.42□□□□□ -2.02
CCDC140Q96MF4 AC068657.1-201ENST00000520807 306 ntBASIC2.42□□□□□ -2.02
CCDC140Q96MF4 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 142.8 ms