Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AL773524.1-201ENST00000614065 229 ntBASIC2.22□□□□□ -2.05
CLRN3Q8NCR9 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.22□□□□□ -2.05
CLRN3Q8NCR9 MIR6075-201ENST00000620782 95 ntBASIC2.22□□□□□ -2.05
CLRN3Q8NCR9 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.05
CLRN3Q8NCR9 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 Y_RNA.150-201ENST00000363562 102 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 Y_RNA.180-201ENST00000363867 113 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 RNA5SP72-201ENST00000364442 117 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 snoU2-30.1-201ENST00000365012 70 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 SNORD15B-201ENST00000384714 146 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 MIR802-201ENST00000390235 94 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 SNORA12.1-201ENST00000390873 148 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 SNORA26-201ENST00000391286 122 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 MIR548I3-201ENST00000408378 149 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 MIR548I1-201ENST00000408810 149 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 RPS12P2-201ENST00000439728 269 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 RPL23AP6-201ENST00000446637 472 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 AL121914.1-201ENST00000450188 156 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 NDUFA4P2-201ENST00000489989 244 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 SCARNA16.3-201ENST00000516595 184 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 MIR4276-201ENST00000584832 70 ntBASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CLRN3Q8NCR9 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CLRN3Q8NCR9 RNU6-1084P-201ENST00000362498 107 ntBASIC2.2□□□□□ -2.06
CLRN3Q8NCR9 Y_RNA.432-201ENST00000384087 111 ntBASIC2.2□□□□□ -2.06
CLRN3Q8NCR9 MIR17-201ENST00000385012 84 ntBASIC2.2□□□□□ -2.06
CLRN3Q8NCR9 MIR15B-201ENST00000385045 98 ntBASIC2.2□□□□□ -2.06
CLRN3Q8NCR9 RNA5SP210-201ENST00000391034 120 ntBASIC2.2□□□□□ -2.06
CLRN3Q8NCR9 RNU4-43P-201ENST00000410628 137 ntBASIC2.2□□□□□ -2.06
CLRN3Q8NCR9 HMGN2P32-201ENST00000444648 269 ntBASIC2.2□□□□□ -2.06
CLRN3Q8NCR9 CYCTP-201ENST00000504253 315 ntBASIC2.2□□□□□ -2.06
CLRN3Q8NCR9 RNU7-149P-201ENST00000516739 59 ntBASIC2.2□□□□□ -2.06
CLRN3Q8NCR9 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.2□□□□□ -2.06
CLRN3Q8NCR9 AC008507.4-201ENST00000585464 127 ntBASIC2.2□□□□□ -2.06
CLRN3Q8NCR9 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CLRN3Q8NCR9 SNORD14E-201ENST00000364009 85 ntBASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 SNORA48.7-201ENST00000391302 135 ntBASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 RN7SKP27-201ENST00000410684 333 ntBASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 AC006028.1-201ENST00000438379 402 ntBASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 SCGB1D5P-201ENST00000515134 247 ntBASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 RNU6-1299P-201ENST00000516316 100 ntBASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 MIR4431-201ENST00000579990 94 ntBASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 AC120024.3-201ENST00000603167 156 ntBASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 AC084757.4-201ENST00000616350 526 ntBASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 AL513423.1-201ENST00000621695 132 ntBASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 AC027279.3-201ENST00000625055 122 ntBASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CLRN3Q8NCR9 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CLRN3Q8NCR9 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CLRN3Q8NCR9 MIR26A1-201ENST00000362205 77 ntBASIC2.18□□□□□ -2.06
CLRN3Q8NCR9 SNORD45.3-201ENST00000363836 72 ntBASIC2.18□□□□□ -2.06
CLRN3Q8NCR9 Y_RNA.357-201ENST00000365487 109 ntBASIC2.18□□□□□ -2.06
CLRN3Q8NCR9 Y_RNA.622-201ENST00000411091 108 ntBASIC2.18□□□□□ -2.06
CLRN3Q8NCR9 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.18□□□□□ -2.06
CLRN3Q8NCR9 RNA5SP153-201ENST00000516498 76 ntBASIC2.18□□□□□ -2.06
CLRN3Q8NCR9 AL160236.1-201ENST00000556317 195 ntBASIC2.18□□□□□ -2.06
CLRN3Q8NCR9 MIR4713-201ENST00000582691 75 ntBASIC2.18□□□□□ -2.06
CLRN3Q8NCR9 Pinc.1-201ENST00000616452 154 ntBASIC2.18□□□□□ -2.06
CLRN3Q8NCR9 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.18□□□□□ -2.06
CLRN3Q8NCR9 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 Y_RNA.336-201ENST00000365307 109 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 RNU6-442P-201ENST00000383968 104 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 RNU6-424P-201ENST00000384367 105 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 RNU6-163P-201ENST00000384396 106 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 PCNPP3-201ENST00000393579 471 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 RNU4-47P-201ENST00000410876 114 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 AL139132.1-201ENST00000431587 344 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 AC079804.2-201ENST00000490376 200 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 MRPS17P9-201ENST00000511924 393 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 AC022254.1-201ENST00000567857 235 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 MIR4299-201ENST00000577899 72 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 ZNF861P-201ENST00000588126 639 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 MIR6840-201ENST00000611937 71 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 AC021506.2-201ENST00000612354 169 ntBASIC2.17□□□□□ -2.06
CLRN3Q8NCR9 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
CLRN3Q8NCR9 RNU6-661P-201ENST00000362409 107 ntBASIC2.16□□□□□ -2.06
CLRN3Q8NCR9 RNU6-414P-201ENST00000363705 104 ntBASIC2.16□□□□□ -2.06
CLRN3Q8NCR9 RNU6-643P-201ENST00000384018 107 ntBASIC2.16□□□□□ -2.06
CLRN3Q8NCR9 Y_RNA.441-201ENST00000384123 112 ntBASIC2.16□□□□□ -2.06
CLRN3Q8NCR9 RNU2-70P-201ENST00000410718 179 ntBASIC2.16□□□□□ -2.06
CLRN3Q8NCR9 RN7SKP51-201ENST00000410781 304 ntBASIC2.16□□□□□ -2.06
CLRN3Q8NCR9 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.16□□□□□ -2.06
CLRN3Q8NCR9 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.16□□□□□ -2.06
CLRN3Q8NCR9 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.16□□□□□ -2.06
CLRN3Q8NCR9 PGBD4P5-201ENST00000445958 426 ntBASIC2.16□□□□□ -2.06
CLRN3Q8NCR9 PRSS3P4-201ENST00000453323 162 ntBASIC2.16□□□□□ -2.06
CLRN3Q8NCR9 SNRPGP8-201ENST00000454064 226 ntBASIC2.16□□□□□ -2.06
CLRN3Q8NCR9 RN7SL807P-201ENST00000470923 297 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms