Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RNU7-25P-201ENST00000516544 62 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 RNU1-128P-201ENST00000516704 160 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 SNORA70.19-201ENST00000516717 90 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 AC087499.8-201ENST00000578406 226 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 AC069114.2-201ENST00000604699 304 ntBASIC3.28□□□□□ -1.88
DEPDC4Q8N2C3 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 Y_RNA.37-201ENST00000362606 108 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 RNA5SP72-201ENST00000364442 117 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 MIR570-201ENST00000384917 97 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 MIR548A1-201ENST00000385041 97 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 AL035423.1-201ENST00000420331 213 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 CALM2P4-201ENST00000430810 426 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 AL606517.2-201ENST00000442855 241 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 AC087499.4-201ENST00000448505 178 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 SNORA59A-201ENST00000459326 152 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 RPS27P29-201ENST00000463110 252 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 RPL23AP67-201ENST00000465341 474 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 AC021205.2-201ENST00000480069 347 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 AC026333.2-201ENST00000542164 106 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 SNORA50A-202ENST00000629536 136 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 ZNF720P1-201ENST00000562403 1939 ntBASIC3.27□□□□□ -1.89
DEPDC4Q8N2C3 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
DEPDC4Q8N2C3 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.26□□□□□ -1.89
DEPDC4Q8N2C3 RNA5SP383-201ENST00000362934 120 ntBASIC3.26□□□□□ -1.89
DEPDC4Q8N2C3 Y_RNA.281-201ENST00000364774 94 ntBASIC3.26□□□□□ -1.89
DEPDC4Q8N2C3 Y_RNA.309-201ENST00000365046 111 ntBASIC3.26□□□□□ -1.89
DEPDC4Q8N2C3 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
DEPDC4Q8N2C3 HMGN1P18-201ENST00000457642 277 ntBASIC3.26□□□□□ -1.89
DEPDC4Q8N2C3 RNA5SP137-201ENST00000516833 135 ntBASIC3.26□□□□□ -1.89
DEPDC4Q8N2C3 MIR8054-201ENST00000620877 86 ntBASIC3.26□□□□□ -1.89
DEPDC4Q8N2C3 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.26□□□□□ -1.89
DEPDC4Q8N2C3 SNORA2.2-201ENST00000365473 135 ntBASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 SNORA5A-201ENST00000384111 134 ntBASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 NDUFB4P4-201ENST00000404822 243 ntBASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 AL445646.1-201ENST00000431784 216 ntBASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 AP003355.3-201ENST00000623465 114 ntBASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 AC027279.3-201ENST00000625055 122 ntBASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
DEPDC4Q8N2C3 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 Y_RNA.366-201ENST00000365540 102 ntBASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 RNU6-440P-201ENST00000390882 105 ntBASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 RNA5SP109-201ENST00000391010 116 ntBASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 RNA5SP293-201ENST00000410527 113 ntBASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 SNORD105B-201ENST00000458770 79 ntBASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 MIR3126-201ENST00000577443 74 ntBASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 MIR5195-201ENST00000583555 115 ntBASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 MIR7851-201ENST00000610611 160 ntBASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 AL442644.1-201ENST00000454390 3105 ntBASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.24□□□□□ -1.89
DEPDC4Q8N2C3 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 RNU6-1298P-201ENST00000362456 101 ntBASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 RNU1-148P-201ENST00000384472 162 ntBASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 RNU6-950P-201ENST00000384651 107 ntBASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 MIR183-201ENST00000384958 110 ntBASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 MIR218-2-201ENST00000385006 110 ntBASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 Z92545.1-201ENST00000411782 234 ntBASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 RPS29P4-201ENST00000414733 161 ntBASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 SNORA64.4-201ENST00000516632 81 ntBASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 AC084364.2-201ENST00000546924 395 ntBASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 AC005000.2-201ENST00000605468 310 ntBASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 U3.45-201ENST00000607547 219 ntBASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
DEPDC4Q8N2C3 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
DEPDC4Q8N2C3 Y_RNA.43-201ENST00000362670 111 ntBASIC3.22□□□□□ -1.89
DEPDC4Q8N2C3 Y_RNA.440-201ENST00000384120 114 ntBASIC3.22□□□□□ -1.89
DEPDC4Q8N2C3 U8.11-201ENST00000384699 133 ntBASIC3.22□□□□□ -1.89
DEPDC4Q8N2C3 U8.18-201ENST00000459285 133 ntBASIC3.22□□□□□ -1.89
DEPDC4Q8N2C3 MIR2276-201ENST00000516886 89 ntBASIC3.22□□□□□ -1.89
DEPDC4Q8N2C3 SCARNA14-201ENST00000516903 136 ntBASIC3.22□□□□□ -1.89
DEPDC4Q8N2C3 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.22□□□□□ -1.89
DEPDC4Q8N2C3 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.22□□□□□ -1.89
DEPDC4Q8N2C3 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
DEPDC4Q8N2C3 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
DEPDC4Q8N2C3 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC3.22□□□□□ -1.89
DEPDC4Q8N2C3 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.21□□□□□ -1.9
DEPDC4Q8N2C3 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
DEPDC4Q8N2C3 AC008555.8-201ENST00000623602 2168 ntBASIC3.21□□□□□ -1.9
DEPDC4Q8N2C3 SNORD115-3-201ENST00000363100 82 ntBASIC3.21□□□□□ -1.9
DEPDC4Q8N2C3 SNORD38C-201ENST00000384381 69 ntBASIC3.21□□□□□ -1.9
DEPDC4Q8N2C3 RNU6-938P-201ENST00000411285 103 ntBASIC3.21□□□□□ -1.9
DEPDC4Q8N2C3 STAG3L5P-204ENST00000443759 179 ntBASIC3.21□□□□□ -1.9
DEPDC4Q8N2C3 RNU6-830P-201ENST00000516353 107 ntBASIC3.21□□□□□ -1.9
DEPDC4Q8N2C3 RNU7-70P-201ENST00000516941 66 ntBASIC3.21□□□□□ -1.9
DEPDC4Q8N2C3 AC007012.1-201ENST00000567192 175 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms