Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNU6-392P-201ENST00000364926 101 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.383-201ENST00000383855 97 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.462-201ENST00000384268 102 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 SNORD116-13-201ENST00000384408 92 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 RNA5SP511-201ENST00000410487 115 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.621-201ENST00000411065 96 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 COX6CP10-201ENST00000416832 224 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 POLR2KP2-201ENST00000438155 177 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 MTND5P22-201ENST00000458380 195 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 RNU6-1278P-201ENST00000516130 107 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 RNU6-635P-201ENST00000516651 102 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 MIR3684-201ENST00000579779 74 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 MIR4423-201ENST00000580922 80 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 AL929325.1-201ENST00000603096 117 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 AC022217.4-201ENST00000604389 163 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 MIR6515-201ENST00000619843 57 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 AC006435.5-201ENST00000624486 112 ntBASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.55□□□□□ -2.16
PDLIM3Q53GG5 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 AL391987.6-201ENST00000305671 199 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.222-201ENST00000364264 102 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.422-201ENST00000384054 114 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.459-201ENST00000384251 102 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 SNORA67.5-201ENST00000391036 107 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 RNU6-855P-201ENST00000410395 104 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 AC069257.2-201ENST00000441819 155 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 DYNLT3P2-201ENST00000442517 295 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 LINC01399-202ENST00000458450 244 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 SEPT14P8-201ENST00000508026 178 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 SNORA70.12-201ENST00000516084 153 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 AC024995.1-201ENST00000523014 93 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 AL442663.2-201ENST00000554385 511 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 AL355297.3-201ENST00000604082 446 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 AC007742.2-201ENST00000618226 398 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 AC100821.1-201ENST00000523153 2479 ntBASIC1.54□□□□□ -2.16
PDLIM3Q53GG5 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 MIR424-201ENST00000362227 98 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 RNU4-80P-201ENST00000363200 141 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 RNU6-414P-201ENST00000363705 104 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 RNU4-13P-201ENST00000364019 141 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 RNU6-342P-201ENST00000384521 104 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 RNU6-1160P-201ENST00000384546 104 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 AL390729.2-201ENST00000416137 156 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 AC107393.1-201ENST00000512403 346 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 RNU6-570P-201ENST00000517051 105 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.720-201ENST00000517166 92 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 AC018630.2-201ENST00000534866 2403 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 AC024614.2-201ENST00000577584 372 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 AL353621.2-201ENST00000605340 133 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 AC005828.6-201ENST00000606610 232 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 SNORD113-5-201ENST00000607261 78 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 AL512598.1-201ENST00000610158 273 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 Y_RNA.783-201ENST00000613546 102 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 MIR8074-201ENST00000615081 81 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 MIR6079-201ENST00000635807 62 ntBASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.53□□□□□ -2.16
PDLIM3Q53GG5 SNORA63D-201ENST00000364359 132 ntBASIC1.52□□□□□ -2.17
PDLIM3Q53GG5 SNORD63-201ENST00000384262 68 ntBASIC1.52□□□□□ -2.17
PDLIM3Q53GG5 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
PDLIM3Q53GG5 SNORD115-46-201ENST00000390982 71 ntBASIC1.52□□□□□ -2.17
PDLIM3Q53GG5 AC004965.1-201ENST00000413033 213 ntBASIC1.52□□□□□ -2.17
PDLIM3Q53GG5 RPS27P1-201ENST00000450552 247 ntBASIC1.52□□□□□ -2.17
PDLIM3Q53GG5 snoU13.27-201ENST00000459278 104 ntBASIC1.52□□□□□ -2.17
PDLIM3Q53GG5 RNU6-970P-201ENST00000516312 107 ntBASIC1.52□□□□□ -2.17
PDLIM3Q53GG5 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.52□□□□□ -2.17
PDLIM3Q53GG5 RNU6-1096P-201ENST00000517089 102 ntBASIC1.52□□□□□ -2.17
PDLIM3Q53GG5 MIR4709-201ENST00000577272 72 ntBASIC1.52□□□□□ -2.17
PDLIM3Q53GG5 SNRPGP19-201ENST00000603826 189 ntBASIC1.52□□□□□ -2.17
PDLIM3Q53GG5 MIR8054-201ENST00000620877 86 ntBASIC1.52□□□□□ -2.17
PDLIM3Q53GG5 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 Y_RNA.205-201ENST00000364128 113 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 SNORA63C-201ENST00000364578 129 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 RNU6-338P-201ENST00000383888 105 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 RNU6-440P-201ENST00000390882 105 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 RNU2-61P-201ENST00000411069 191 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 STAG3L5P-204ENST00000443759 179 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 RNU7-95P-201ENST00000459222 64 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 AC005908.1-201ENST00000468701 347 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 AC025465.3-201ENST00000510570 311 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 SCARNA15.1-201ENST00000516384 125 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 SNORA31.10-201ENST00000516482 106 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 RNU2-56P-201ENST00000516826 190 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 SCARNA24.2-201ENST00000516968 130 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 AP003733.2-201ENST00000529409 171 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 AC008269.2-201ENST00000561915 1105 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 MIR3122-201ENST00000577243 73 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 AC022709.1-201ENST00000615967 87 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 PVT1_3.1-201ENST00000620853 95 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms