Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC024067.1-201ENST00000426199 223 ntBASIC1.75□□□□□ -2.13
USP41Q3LFD5 RPS27P1-201ENST00000450552 247 ntBASIC1.75□□□□□ -2.13
USP41Q3LFD5 HSPE1P13-201ENST00000451143 297 ntBASIC1.75□□□□□ -2.13
USP41Q3LFD5 HSPE1P25-201ENST00000455484 251 ntBASIC1.75□□□□□ -2.13
USP41Q3LFD5 AC091021.1-201ENST00000468051 388 ntBASIC1.75□□□□□ -2.13
USP41Q3LFD5 RNU6-327P-201ENST00000516270 127 ntBASIC1.75□□□□□ -2.13
USP41Q3LFD5 RNU6-635P-201ENST00000516651 102 ntBASIC1.75□□□□□ -2.13
USP41Q3LFD5 SNORD53B-201ENST00000577887 78 ntBASIC1.75□□□□□ -2.13
USP41Q3LFD5 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
USP41Q3LFD5 RNU4-13P-201ENST00000364019 141 ntBASIC1.74□□□□□ -2.13
USP41Q3LFD5 Y_RNA.222-201ENST00000364264 102 ntBASIC1.74□□□□□ -2.13
USP41Q3LFD5 SNORD116-13-201ENST00000384408 92 ntBASIC1.74□□□□□ -2.13
USP41Q3LFD5 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
USP41Q3LFD5 Y_RNA.581-201ENST00000391017 97 ntBASIC1.74□□□□□ -2.13
USP41Q3LFD5 RNU6-710P-201ENST00000410424 105 ntBASIC1.74□□□□□ -2.13
USP41Q3LFD5 AL731563.1-201ENST00000442202 214 ntBASIC1.74□□□□□ -2.13
USP41Q3LFD5 MTND5P22-201ENST00000458380 195 ntBASIC1.74□□□□□ -2.13
USP41Q3LFD5 RNU7-34P-201ENST00000459394 64 ntBASIC1.74□□□□□ -2.13
USP41Q3LFD5 RNU7-94P-201ENST00000459576 63 ntBASIC1.74□□□□□ -2.13
USP41Q3LFD5 AC025465.3-201ENST00000510570 311 ntBASIC1.74□□□□□ -2.13
USP41Q3LFD5 DNAJC19P9-201ENST00000555084 351 ntBASIC1.74□□□□□ -2.13
USP41Q3LFD5 AC103810.8-201ENST00000607347 118 ntBASIC1.74□□□□□ -2.13
USP41Q3LFD5 AL512598.1-201ENST00000610158 273 ntBASIC1.74□□□□□ -2.13
USP41Q3LFD5 snoU2_19.2-201ENST00000363024 80 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 RNU4-80P-201ENST00000363200 141 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 Y_RNA.512-201ENST00000384518 102 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 Y_RNA.569-201ENST00000384749 103 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 RNU6-1109P-201ENST00000391187 107 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 MTND2P23-201ENST00000422990 651 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 AC233266.1-201ENST00000454518 96 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 snoU13.27-201ENST00000459278 104 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 RNU6-1291P-201ENST00000516591 104 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 AC008269.2-201ENST00000561915 1105 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 MIR4709-201ENST00000577272 72 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 AC242852.1-201ENST00000612151 96 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 MIR8054-201ENST00000620877 86 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 AC244015.1-201ENST00000622301 99 ntBASIC1.73□□□□□ -2.13
USP41Q3LFD5 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.72□□□□□ -2.13
USP41Q3LFD5 RNU6-414P-201ENST00000363705 104 ntBASIC1.72□□□□□ -2.13
USP41Q3LFD5 Y_RNA.341-201ENST00000365341 102 ntBASIC1.72□□□□□ -2.13
USP41Q3LFD5 RNU6-713P-201ENST00000384761 107 ntBASIC1.72□□□□□ -2.13
USP41Q3LFD5 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.72□□□□□ -2.13
USP41Q3LFD5 RNU6-570P-201ENST00000517051 105 ntBASIC1.72□□□□□ -2.13
USP41Q3LFD5 RNU6-1096P-201ENST00000517089 102 ntBASIC1.72□□□□□ -2.13
USP41Q3LFD5 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.72□□□□□ -2.13
USP41Q3LFD5 AC015720.1-201ENST00000565251 277 ntBASIC1.72□□□□□ -2.13
USP41Q3LFD5 AL929325.1-201ENST00000603096 117 ntBASIC1.72□□□□□ -2.13
USP41Q3LFD5 AC136443.5-201ENST00000603741 370 ntBASIC1.72□□□□□ -2.13
USP41Q3LFD5 AC004832.4-201ENST00000608952 331 ntBASIC1.72□□□□□ -2.13
USP41Q3LFD5 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.72□□□□□ -2.13
USP41Q3LFD5 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
USP41Q3LFD5 RNU6-290P-201ENST00000365212 101 ntBASIC1.71□□□□□ -2.14
USP41Q3LFD5 Y_RNA.541-201ENST00000384640 113 ntBASIC1.71□□□□□ -2.14
USP41Q3LFD5 RNU6-950P-201ENST00000384651 107 ntBASIC1.71□□□□□ -2.14
USP41Q3LFD5 RNU6-440P-201ENST00000390882 105 ntBASIC1.71□□□□□ -2.14
USP41Q3LFD5 RNU6-360P-201ENST00000390944 104 ntBASIC1.71□□□□□ -2.14
USP41Q3LFD5 Y_RNA.621-201ENST00000411065 96 ntBASIC1.71□□□□□ -2.14
USP41Q3LFD5 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.71□□□□□ -2.14
USP41Q3LFD5 AL162725.1-201ENST00000435405 301 ntBASIC1.71□□□□□ -2.14
USP41Q3LFD5 AL118496.2-201ENST00000448300 230 ntBASIC1.71□□□□□ -2.14
USP41Q3LFD5 RPS20P10-201ENST00000451209 253 ntBASIC1.71□□□□□ -2.14
USP41Q3LFD5 RNU7-95P-201ENST00000459222 64 ntBASIC1.71□□□□□ -2.14
USP41Q3LFD5 HMGN1P10-201ENST00000474557 553 ntBASIC1.71□□□□□ -2.14
USP41Q3LFD5 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.71□□□□□ -2.14
USP41Q3LFD5 MIR4781-201ENST00000585250 76 ntBASIC1.71□□□□□ -2.14
USP41Q3LFD5 RNU6-60P-201ENST00000364792 103 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 Y_RNA.418-201ENST00000384029 102 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 MIR520G-201ENST00000385064 90 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
USP41Q3LFD5 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 RNU6-321P-201ENST00000410912 106 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 RN7SKP101-201ENST00000411376 320 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 SNORA31.10-201ENST00000516482 106 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 RNU2-56P-201ENST00000516826 190 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 RNU6-341P-201ENST00000516973 96 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 SNORA44.1-201ENST00000517031 108 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 AC091178.2-201ENST00000584401 117 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 AL359821.1-201ENST00000605519 182 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 PRR13P7-201ENST00000605538 430 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 AC037487.3-201ENST00000606668 112 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.7□□□□□ -2.14
USP41Q3LFD5 AC068647.2-201ENST00000637380 353 ntBASIC1.7□□□□□ -2.14
USP41Q3LFD5 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
USP41Q3LFD5 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.7□□□□□ -2.14
USP41Q3LFD5 Y_RNA.16-201ENST00000362421 102 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 Y_RNA.84-201ENST00000363011 104 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 RNU1-42P-201ENST00000364033 160 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 Y_RNA.265-201ENST00000364677 108 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 Y_RNA.574-201ENST00000384766 95 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 MIR562-201ENST00000384894 95 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 SNORA53-201ENST00000391141 249 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 MIR548F4-201ENST00000408515 105 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 RN7SKP200-201ENST00000410564 320 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 RNA5SP247-201ENST00000411181 105 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 FTH1P12-201ENST00000432137 551 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 HSPE1P21-201ENST00000438283 308 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 STAG3L5P-204ENST00000443759 179 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 RPS4XP11-201ENST00000446897 772 ntBASIC1.69□□□□□ -2.14
USP41Q3LFD5 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.69□□□□□ -2.14
USP41Q3LFD5 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms