Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR5009-201ENST00000578736 100 ntBASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 MIR3944-201ENST00000581277 108 ntBASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 AL121772.2-201ENST00000614331 297 ntBASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 AL442128.1-201ENST00000615151 90 ntBASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 MIR6075-201ENST00000620782 95 ntBASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 MIR7153-201ENST00000637758 57 ntBASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
HIF3AQ9Y2N7 Y_RNA.220-201ENST00000364244 109 ntBASIC3.07□□□□□ -1.92
HIF3AQ9Y2N7 MIR561-201ENST00000385216 97 ntBASIC3.07□□□□□ -1.92
HIF3AQ9Y2N7 MIR802-201ENST00000390235 94 ntBASIC3.07□□□□□ -1.92
HIF3AQ9Y2N7 RPS15AP28-201ENST00000435088 386 ntBASIC3.07□□□□□ -1.92
HIF3AQ9Y2N7 RNU1-95P-201ENST00000516357 160 ntBASIC3.07□□□□□ -1.92
HIF3AQ9Y2N7 RNU1-128P-201ENST00000516704 160 ntBASIC3.07□□□□□ -1.92
HIF3AQ9Y2N7 RN7SKP282-201ENST00000516824 299 ntBASIC3.07□□□□□ -1.92
HIF3AQ9Y2N7 AC068339.1-201ENST00000526965 141 ntBASIC3.07□□□□□ -1.92
HIF3AQ9Y2N7 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.07□□□□□ -1.92
HIF3AQ9Y2N7 AL355297.2-201ENST00000604792 129 ntBASIC3.07□□□□□ -1.92
HIF3AQ9Y2N7 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.07□□□□□ -1.92
HIF3AQ9Y2N7 AL356274.2-201ENST00000624379 3752 ntBASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 snoU2-30.2-201ENST00000362805 70 ntBASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 RNY4P6-201ENST00000363667 96 ntBASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 SNORA5A-201ENST00000384111 134 ntBASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 RNA5SP467-201ENST00000391274 118 ntBASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 AC106707.2-201ENST00000484182 374 ntBASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 AC104619.4-201ENST00000510773 249 ntBASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 RNU7-99P-201ENST00000516271 62 ntBASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 AC007229.1-201ENST00000590455 412 ntBASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 AC009093.8-201ENST00000641769 292 ntBASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
HIF3AQ9Y2N7 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 SNORA2.2-201ENST00000365473 135 ntBASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 RNU6-592P-201ENST00000411333 103 ntBASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 AL133547.1-201ENST00000448546 220 ntBASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 RNU7-128P-201ENST00000517247 62 ntBASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 SUMO2P16-201ENST00000519475 264 ntBASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 AC021443.1-201ENST00000604478 211 ntBASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 MIR6079-201ENST00000635807 62 ntBASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 ZNF271P-202ENST00000465539 1970 ntBASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.05□□□□□ -1.92
HIF3AQ9Y2N7 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 RNA5SP124-201ENST00000362739 110 ntBASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 Y_RNA.344-201ENST00000365381 112 ntBASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 MIR759-201ENST00000390224 91 ntBASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 SNORD17-201ENST00000390930 237 ntBASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 SNORA11.1-201ENST00000408133 129 ntBASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 MIR548O-201ENST00000408583 114 ntBASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 HMGN1P18-201ENST00000457642 277 ntBASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 RPS26P48-201ENST00000491713 339 ntBASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 RN7SKP12-201ENST00000516275 143 ntBASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 AC022523.2-201ENST00000561045 150 ntBASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 AC073476.4-201ENST00000628409 72 ntBASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.04□□□□□ -1.92
HIF3AQ9Y2N7 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 AC092435.3-201ENST00000565538 3654 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 MIR494-201ENST00000349529 81 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 SNORD46.1-201ENST00000364139 104 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 RNA5SP387-201ENST00000364226 106 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 MIR7-3-201ENST00000384898 110 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 U8.17-201ENST00000391292 132 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 RPS3AP1-201ENST00000413190 320 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 AL353689.1-201ENST00000438895 199 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 snoU13.22-201ENST00000459428 104 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 RNU6-1041P-201ENST00000516254 102 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 RNU7-25P-201ENST00000516544 62 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 MIR4444-1-201ENST00000581696 74 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 MIR4444-2-201ENST00000584390 74 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 SNORD115-40-201ENST00000606510 82 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 MALAT1.1-201ENST00000618249 95 ntBASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
HIF3AQ9Y2N7 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 AC018630.2-201ENST00000534866 2403 ntBASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 SNORA33-201ENST00000363664 130 ntBASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 MIR592-201ENST00000384959 97 ntBASIC3.02□□□□□ -1.93
HIF3AQ9Y2N7 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms