Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AP002004.2-201ENST00000531656 154 ntBASIC2.94□□□□□ -1.94
UBE3DQ7Z6J8 MIR622-201ENST00000638396 96 ntBASIC2.94□□□□□ -1.94
UBE3DQ7Z6J8 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.94□□□□□ -1.94
UBE3DQ7Z6J8 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
UBE3DQ7Z6J8 ZNF271P-202ENST00000465539 1970 ntBASIC2.94□□□□□ -1.94
UBE3DQ7Z6J8 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
UBE3DQ7Z6J8 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
UBE3DQ7Z6J8 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
UBE3DQ7Z6J8 RNU6-1164P-201ENST00000364428 107 ntBASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 EDDM3CP-201ENST00000415977 425 ntBASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 SNRPGP13-201ENST00000442212 177 ntBASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 AC233266.1-201ENST00000454518 96 ntBASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 RN7SL20P-201ENST00000488827 297 ntBASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 AC007536.1-201ENST00000533382 349 ntBASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 MIR3129-201ENST00000581095 76 ntBASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 AC007179.3-201ENST00000604976 235 ntBASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 AC242852.1-201ENST00000612151 96 ntBASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 AC244015.1-201ENST00000622301 99 ntBASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
UBE3DQ7Z6J8 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 AL136360.1-201ENST00000503377 1900 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 AC073325.2-201ENST00000339545 159 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 SNORD61-201ENST00000384252 73 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 RNU6-160P-201ENST00000384591 107 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 RNU6-220P-201ENST00000390919 107 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 RNA5SP136-201ENST00000410906 107 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 AC104332.2-201ENST00000429959 156 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 FTH1P12-201ENST00000432137 551 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 Y_RNA.649-201ENST00000459077 103 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 AC018868.1-201ENST00000491307 315 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 RNU6-781P-201ENST00000516377 101 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 RNU6-1291P-201ENST00000516591 104 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 MIR3944-201ENST00000581277 108 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 MIR4506-201ENST00000584693 77 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 U4atac.1-201ENST00000618345 95 ntBASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
UBE3DQ7Z6J8 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 Y_RNA.35-201ENST00000362601 101 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 RNA5SP374-201ENST00000362939 125 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 RNU6-147P-201ENST00000383983 107 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 SNORA1-201ENST00000384107 130 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 SNORA46-201ENST00000384762 135 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 RN7SKP284-201ENST00000411002 343 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 CST2P1-201ENST00000425770 87 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 ATP5J2P3-201ENST00000451550 258 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 RNA5SP385-201ENST00000515947 110 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 RNU6-412P-201ENST00000516434 106 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 AC091544.4-201ENST00000555268 342 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 AC007318.2-201ENST00000620999 243 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 U6.108-201ENST00000637764 58 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 MTND5P32-201ENST00000560711 1802 ntBASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.91□□□□□ -1.94
UBE3DQ7Z6J8 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.9□□□□□ -1.94
UBE3DQ7Z6J8 AC092435.3-201ENST00000565538 3654 ntBASIC2.9□□□□□ -1.94
UBE3DQ7Z6J8 MIR126-201ENST00000362291 85 ntBASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 RNU6-1298P-201ENST00000362456 101 ntBASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 SNORA38.1-201ENST00000364172 131 ntBASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 SNORA25B-201ENST00000365507 128 ntBASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 SNORA12.1-201ENST00000390873 148 ntBASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 RN7SKP220-201ENST00000410611 288 ntBASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 AC008885.1-201ENST00000514930 301 ntBASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 RNU6-1041P-201ENST00000516254 102 ntBASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 RNA5SP170-201ENST00000517150 101 ntBASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 AC245166.1-201ENST00000521012 253 ntBASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 MIR3651-201ENST00000630427 90 ntBASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 MTND5P18-201ENST00000445624 1801 ntBASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.95
UBE3DQ7Z6J8 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 SNORD46.1-201ENST00000364139 104 ntBASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 U8.5-201ENST00000364528 136 ntBASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 SNORD21-201ENST00000383953 95 ntBASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 Y_RNA.410-201ENST00000383992 113 ntBASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 SNORD72-201ENST00000390994 80 ntBASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 RNA5SP323-201ENST00000391094 133 ntBASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 RNA5SP467-201ENST00000391274 118 ntBASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 MIR1289-1-201ENST00000408836 144 ntBASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 SCGB1D5P-201ENST00000515134 247 ntBASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 MIR4762-201ENST00000585261 75 ntBASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 AL591926.4-201ENST00000616895 298 ntBASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.89□□□□□ -1.95
UBE3DQ7Z6J8 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
UBE3DQ7Z6J8 MIR22-201ENST00000362190 85 ntBASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 199.4 ms