Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SNORA20-201ENST00000384662 132 ntBASIC3.03□□□□□ -1.92
LIG3P49916 MIR562-201ENST00000384894 95 ntBASIC3.03□□□□□ -1.92
LIG3P49916 NDUFB4P4-201ENST00000404822 243 ntBASIC3.03□□□□□ -1.92
LIG3P49916 RNU2-70P-201ENST00000410718 179 ntBASIC3.03□□□□□ -1.92
LIG3P49916 AC233266.1-201ENST00000454518 96 ntBASIC3.03□□□□□ -1.92
LIG3P49916 RNU7-197P-201ENST00000458836 62 ntBASIC3.03□□□□□ -1.92
LIG3P49916 RN7SL20P-201ENST00000488827 297 ntBASIC3.03□□□□□ -1.92
LIG3P49916 RNA5SP153-201ENST00000516498 76 ntBASIC3.03□□□□□ -1.92
LIG3P49916 RNU6-126P-201ENST00000516685 103 ntBASIC3.03□□□□□ -1.92
LIG3P49916 RNU6-56P-201ENST00000516986 93 ntBASIC3.03□□□□□ -1.92
LIG3P49916 AC004486.1-201ENST00000546846 233 ntBASIC3.03□□□□□ -1.92
LIG3P49916 AC026271.5-201ENST00000577873 130 ntBASIC3.03□□□□□ -1.92
LIG3P49916 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.03□□□□□ -1.92
LIG3P49916 AC242852.1-201ENST00000612151 96 ntBASIC3.03□□□□□ -1.92
LIG3P49916 AC244015.1-201ENST00000622301 99 ntBASIC3.03□□□□□ -1.92
LIG3P49916 MIR6079-201ENST00000635807 62 ntBASIC3.03□□□□□ -1.92
LIG3P49916 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.03□□□□□ -1.92
LIG3P49916 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.03□□□□□ -1.93
LIG3P49916 AC018630.2-201ENST00000534866 2403 ntBASIC3.02□□□□□ -1.93
LIG3P49916 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
LIG3P49916 SNORA44-201ENST00000384584 132 ntBASIC3.02□□□□□ -1.93
LIG3P49916 SNORA26-201ENST00000391286 122 ntBASIC3.02□□□□□ -1.93
LIG3P49916 RNU6-588P-201ENST00000410281 105 ntBASIC3.02□□□□□ -1.93
LIG3P49916 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.02□□□□□ -1.93
LIG3P49916 AC022018.1-201ENST00000430685 241 ntBASIC3.02□□□□□ -1.93
LIG3P49916 AC245047.4-201ENST00000433189 144 ntBASIC3.02□□□□□ -1.93
LIG3P49916 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.02□□□□□ -1.93
LIG3P49916 RNU6-1291P-201ENST00000516591 104 ntBASIC3.02□□□□□ -1.93
LIG3P49916 RNU6-341P-201ENST00000516973 96 ntBASIC3.02□□□□□ -1.93
LIG3P49916 MIR4662B-201ENST00000579498 81 ntBASIC3.02□□□□□ -1.93
LIG3P49916 AC120024.3-201ENST00000603167 156 ntBASIC3.02□□□□□ -1.93
LIG3P49916 AC245060.5-201ENST00000610778 3293 ntBASIC3.02□□□□□ -1.93
LIG3P49916 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.01□□□□□ -1.93
LIG3P49916 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LIG3P49916 AC073325.2-201ENST00000339545 159 ntBASIC3.01□□□□□ -1.93
LIG3P49916 MIR539-201ENST00000365690 78 ntBASIC3.01□□□□□ -1.93
LIG3P49916 RNU6-1154P-201ENST00000391001 104 ntBASIC3.01□□□□□ -1.93
LIG3P49916 AC092991.1-201ENST00000477176 376 ntBASIC3.01□□□□□ -1.93
LIG3P49916 OR9P1P-201ENST00000496431 281 ntBASIC3.01□□□□□ -1.93
LIG3P49916 AC090142.3-201ENST00000519012 385 ntBASIC3.01□□□□□ -1.93
LIG3P49916 AC024995.1-201ENST00000523014 93 ntBASIC3.01□□□□□ -1.93
LIG3P49916 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.01□□□□□ -1.93
LIG3P49916 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3□□□□□ -1.93
LIG3P49916 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3□□□□□ -1.93
LIG3P49916 SNORA25.7-201ENST00000364375 127 ntBASIC3□□□□□ -1.93
LIG3P49916 Y_RNA.267-201ENST00000364679 109 ntBASIC3□□□□□ -1.93
LIG3P49916 SNORA8-201ENST00000384574 139 ntBASIC3□□□□□ -1.93
LIG3P49916 AL117342.1-201ENST00000404861 406 ntBASIC3□□□□□ -1.93
LIG3P49916 CST2P1-201ENST00000425770 87 ntBASIC3□□□□□ -1.93
LIG3P49916 AC008267.6-201ENST00000441664 139 ntBASIC3□□□□□ -1.93
LIG3P49916 UBBP3-201ENST00000445497 241 ntBASIC3□□□□□ -1.93
LIG3P49916 RNU7-94P-201ENST00000459576 63 ntBASIC3□□□□□ -1.93
LIG3P49916 HMGN1P7-201ENST00000491722 313 ntBASIC3□□□□□ -1.93
LIG3P49916 SCARNA13-201ENST00000516672 275 ntBASIC3□□□□□ -1.93
LIG3P49916 RNU7-149P-201ENST00000516739 59 ntBASIC3□□□□□ -1.93
LIG3P49916 AL358944.1-201ENST00000528537 144 ntBASIC3□□□□□ -1.93
LIG3P49916 MIR3670-2-201ENST00000582974 65 ntBASIC3□□□□□ -1.93
LIG3P49916 MIR3670-1-201ENST00000584160 65 ntBASIC3□□□□□ -1.93
LIG3P49916 MIR3670-3-201ENST00000584855 65 ntBASIC3□□□□□ -1.93
LIG3P49916 MIR3670-4-201ENST00000612260 65 ntBASIC3□□□□□ -1.93
LIG3P49916 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC3□□□□□ -1.93
LIG3P49916 TUG1_4.1-201ENST00000619464 181 ntBASIC3□□□□□ -1.93
LIG3P49916 AC007318.2-201ENST00000620999 243 ntBASIC3□□□□□ -1.93
LIG3P49916 U6.108-201ENST00000637764 58 ntBASIC3□□□□□ -1.93
LIG3P49916 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
LIG3P49916 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3□□□□□ -1.93
LIG3P49916 ZNF271P-202ENST00000465539 1970 ntBASIC3□□□□□ -1.93
LIG3P49916 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
LIG3P49916 SNORA25.6-201ENST00000364121 118 ntBASIC2.99□□□□□ -1.93
LIG3P49916 Y_RNA.634-201ENST00000364811 113 ntBASIC2.99□□□□□ -1.93
LIG3P49916 RNU6-1138P-201ENST00000365359 106 ntBASIC2.99□□□□□ -1.93
LIG3P49916 AC097639.2-201ENST00000603159 172 ntBASIC2.99□□□□□ -1.93
LIG3P49916 Pinc.1-201ENST00000616452 154 ntBASIC2.99□□□□□ -1.93
LIG3P49916 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
LIG3P49916 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.98□□□□□ -1.93
LIG3P49916 RNU6-23P-201ENST00000363283 107 ntBASIC2.98□□□□□ -1.93
LIG3P49916 SNORA33-201ENST00000363664 130 ntBASIC2.98□□□□□ -1.93
LIG3P49916 RNA5SP493-201ENST00000364115 91 ntBASIC2.98□□□□□ -1.93
LIG3P49916 RNU6-978P-201ENST00000364371 103 ntBASIC2.98□□□□□ -1.93
LIG3P49916 Y_RNA.542-201ENST00000384641 111 ntBASIC2.98□□□□□ -1.93
LIG3P49916 RNU6-460P-201ENST00000391158 108 ntBASIC2.98□□□□□ -1.93
LIG3P49916 RPS26P45-201ENST00000471748 340 ntBASIC2.98□□□□□ -1.93
LIG3P49916 RNU6-971P-201ENST00000516920 106 ntBASIC2.98□□□□□ -1.93
LIG3P49916 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
LIG3P49916 Y_RNA.253-201ENST00000364562 112 ntBASIC2.97□□□□□ -1.93
LIG3P49916 RNU6-1082P-201ENST00000364574 107 ntBASIC2.97□□□□□ -1.93
LIG3P49916 RNU6-1168P-201ENST00000390831 104 ntBASIC2.97□□□□□ -1.93
LIG3P49916 EEF1A1P41-201ENST00000414667 207 ntBASIC2.97□□□□□ -1.93
LIG3P49916 SNRPGP10-201ENST00000432323 225 ntBASIC2.97□□□□□ -1.93
LIG3P49916 AL109933.2-201ENST00000452651 260 ntBASIC2.97□□□□□ -1.93
LIG3P49916 RNU7-26P-201ENST00000458980 63 ntBASIC2.97□□□□□ -1.93
LIG3P49916 RNU6-1211P-201ENST00000459179 105 ntBASIC2.97□□□□□ -1.93
LIG3P49916 AP001328.1-201ENST00000528550 176 ntBASIC2.97□□□□□ -1.93
LIG3P49916 AL365222.1-201ENST00000614661 98 ntBASIC2.97□□□□□ -1.93
LIG3P49916 AP001340.1-201ENST00000624405 217 ntBASIC2.97□□□□□ -1.93
LIG3P49916 AL137790.1-201ENST00000634283 177 ntBASIC2.97□□□□□ -1.93
LIG3P49916 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.97□□□□□ -1.93
LIG3P49916 RNU6-862P-201ENST00000362804 105 ntBASIC2.96□□□□□ -1.94
LIG3P49916 Y_RNA.91-201ENST00000363042 107 ntBASIC2.96□□□□□ -1.94
LIG3P49916 COTL1P1-201ENST00000422309 375 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms