Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 RNU6-1175P-201ENST00000365200 107 ntBASIC1.47□□□□□ -2.17
LHX1P48742 RNU6-117P-201ENST00000365415 107 ntBASIC1.47□□□□□ -2.17
LHX1P48742 SNORD14.1-201ENST00000365609 90 ntBASIC1.47□□□□□ -2.17
LHX1P48742 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.47□□□□□ -2.17
LHX1P48742 RNU6-1199P-201ENST00000411249 104 ntBASIC1.47□□□□□ -2.17
LHX1P48742 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.47□□□□□ -2.17
LHX1P48742 STAG3L5P-204ENST00000443759 179 ntBASIC1.47□□□□□ -2.17
LHX1P48742 MTND4P19-201ENST00000446659 478 ntBASIC1.47□□□□□ -2.17
LHX1P48742 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.47□□□□□ -2.17
LHX1P48742 RNU6-63P-201ENST00000516690 95 ntBASIC1.47□□□□□ -2.17
LHX1P48742 RNU2-56P-201ENST00000516826 190 ntBASIC1.47□□□□□ -2.17
LHX1P48742 RNU6-341P-201ENST00000516973 96 ntBASIC1.47□□□□□ -2.17
LHX1P48742 Y_RNA.713-201ENST00000517013 96 ntBASIC1.47□□□□□ -2.17
LHX1P48742 AC040926.1-201ENST00000530195 238 ntBASIC1.47□□□□□ -2.17
LHX1P48742 AC022441.3-201ENST00000605737 136 ntBASIC1.47□□□□□ -2.17
LHX1P48742 SNORA28-201ENST00000606769 126 ntBASIC1.47□□□□□ -2.17
LHX1P48742 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.47□□□□□ -2.17
LHX1P48742 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
LHX1P48742 MTND4P29-201ENST00000503122 1372 ntBASIC1.47□□□□□ -2.17
LHX1P48742 MIR302D-201ENST00000362275 68 ntBASIC1.46□□□□□ -2.18
LHX1P48742 Y_RNA.31-201ENST00000362574 102 ntBASIC1.46□□□□□ -2.18
LHX1P48742 RNU6-797P-201ENST00000363101 109 ntBASIC1.46□□□□□ -2.18
LHX1P48742 SNORD1A-201ENST00000364968 72 ntBASIC1.46□□□□□ -2.18
LHX1P48742 Y_RNA.424-201ENST00000384063 103 ntBASIC1.46□□□□□ -2.18
LHX1P48742 Y_RNA.439-201ENST00000384119 94 ntBASIC1.46□□□□□ -2.18
LHX1P48742 Y_RNA.462-201ENST00000384268 102 ntBASIC1.46□□□□□ -2.18
LHX1P48742 RNU6-136P-201ENST00000384663 107 ntBASIC1.46□□□□□ -2.18
LHX1P48742 Y_RNA.570-201ENST00000384750 101 ntBASIC1.46□□□□□ -2.18
LHX1P48742 MIR520G-201ENST00000385064 90 ntBASIC1.46□□□□□ -2.18
LHX1P48742 MIR513A1-201ENST00000385138 129 ntBASIC1.46□□□□□ -2.18
LHX1P48742 RNU1-78P-201ENST00000391248 165 ntBASIC1.46□□□□□ -2.18
LHX1P48742 MIR1302-11-201ENST00000408051 138 ntBASIC1.46□□□□□ -2.18
LHX1P48742 MIR1302-9-201ENST00000408365 138 ntBASIC1.46□□□□□ -2.18
LHX1P48742 MIR1302-10-201ENST00000408734 138 ntBASIC1.46□□□□□ -2.18
LHX1P48742 HSPE1P13-201ENST00000451143 297 ntBASIC1.46□□□□□ -2.18
LHX1P48742 AC005042.3-201ENST00000453230 174 ntBASIC1.46□□□□□ -2.18
LHX1P48742 U8.20-201ENST00000459445 131 ntBASIC1.46□□□□□ -2.18
LHX1P48742 AC079140.2-201ENST00000506193 142 ntBASIC1.46□□□□□ -2.18
LHX1P48742 SNORA25.10-201ENST00000515926 124 ntBASIC1.46□□□□□ -2.18
LHX1P48742 RNU6-1337P-201ENST00000516525 95 ntBASIC1.46□□□□□ -2.18
LHX1P48742 RNU6-1291P-201ENST00000516591 104 ntBASIC1.46□□□□□ -2.18
LHX1P48742 AC015688.6-201ENST00000577737 104 ntBASIC1.46□□□□□ -2.18
LHX1P48742 AC091178.2-201ENST00000584401 117 ntBASIC1.46□□□□□ -2.18
LHX1P48742 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.46□□□□□ -2.18
LHX1P48742 MIR1302-2-201ENST00000607096 138 ntBASIC1.46□□□□□ -2.18
LHX1P48742 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.46□□□□□ -2.18
LHX1P48742 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
LHX1P48742 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
LHX1P48742 Y_RNA.265-201ENST00000364677 108 ntBASIC1.45□□□□□ -2.18
LHX1P48742 Y_RNA.471-201ENST00000384312 102 ntBASIC1.45□□□□□ -2.18
LHX1P48742 RNU5A-5P-201ENST00000411054 116 ntBASIC1.45□□□□□ -2.18
LHX1P48742 AL390729.2-201ENST00000416137 156 ntBASIC1.45□□□□□ -2.18
LHX1P48742 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.45□□□□□ -2.18
LHX1P48742 RNU6-436P-201ENST00000516171 114 ntBASIC1.45□□□□□ -2.18
LHX1P48742 RNU6-966P-201ENST00000516479 104 ntBASIC1.45□□□□□ -2.18
LHX1P48742 AP002004.2-201ENST00000531656 154 ntBASIC1.45□□□□□ -2.18
LHX1P48742 AC040896.1-201ENST00000613819 479 ntBASIC1.45□□□□□ -2.18
LHX1P48742 SNORD33-201ENST00000362761 85 ntBASIC1.44□□□□□ -2.18
LHX1P48742 RNA5SP259-201ENST00000365541 109 ntBASIC1.44□□□□□ -2.18
LHX1P48742 PMCHL1-202ENST00000423102 261 ntBASIC1.44□□□□□ -2.18
LHX1P48742 RPEP5-201ENST00000441137 268 ntBASIC1.44□□□□□ -2.18
LHX1P48742 PGBD4P5-201ENST00000445958 426 ntBASIC1.44□□□□□ -2.18
LHX1P48742 AC233266.1-201ENST00000454518 96 ntBASIC1.44□□□□□ -2.18
LHX1P48742 Y_RNA.631-201ENST00000459607 101 ntBASIC1.44□□□□□ -2.18
LHX1P48742 RNA5SP445-201ENST00000515889 115 ntBASIC1.44□□□□□ -2.18
LHX1P48742 RNU6-1096P-201ENST00000517089 102 ntBASIC1.44□□□□□ -2.18
LHX1P48742 AC019176.1-201ENST00000518519 225 ntBASIC1.44□□□□□ -2.18
LHX1P48742 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.44□□□□□ -2.18
LHX1P48742 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.44□□□□□ -2.18
LHX1P48742 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.44□□□□□ -2.18
LHX1P48742 MIR4423-201ENST00000580922 80 ntBASIC1.44□□□□□ -2.18
LHX1P48742 AC242852.1-201ENST00000612151 96 ntBASIC1.44□□□□□ -2.18
LHX1P48742 AC073349.3-201ENST00000617616 186 ntBASIC1.44□□□□□ -2.18
LHX1P48742 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
LHX1P48742 AC244015.1-201ENST00000622301 99 ntBASIC1.44□□□□□ -2.18
LHX1P48742 AL391987.6-201ENST00000305671 199 ntBASIC1.43□□□□□ -2.18
LHX1P48742 SNORA1B-201ENST00000362535 133 ntBASIC1.43□□□□□ -2.18
LHX1P48742 Y_RNA.331-201ENST00000365267 102 ntBASIC1.43□□□□□ -2.18
LHX1P48742 RNU6-474P-201ENST00000384243 107 ntBASIC1.43□□□□□ -2.18
LHX1P48742 SNORA12.1-201ENST00000390873 148 ntBASIC1.43□□□□□ -2.18
LHX1P48742 RNA5SP511-201ENST00000410487 115 ntBASIC1.43□□□□□ -2.18
LHX1P48742 RNU2-61P-201ENST00000411069 191 ntBASIC1.43□□□□□ -2.18
LHX1P48742 AC245517.4-201ENST00000448601 281 ntBASIC1.43□□□□□ -2.18
LHX1P48742 RNU1-98P-201ENST00000458992 160 ntBASIC1.43□□□□□ -2.18
LHX1P48742 RNU6-1053P-201ENST00000515930 101 ntBASIC1.43□□□□□ -2.18
LHX1P48742 RNU7-28P-201ENST00000516759 62 ntBASIC1.43□□□□□ -2.18
LHX1P48742 RNU7-110P-201ENST00000516891 62 ntBASIC1.43□□□□□ -2.18
LHX1P48742 SUMO2P16-201ENST00000519475 264 ntBASIC1.43□□□□□ -2.18
LHX1P48742 MIR3937-201ENST00000580135 106 ntBASIC1.43□□□□□ -2.18
LHX1P48742 AL359821.1-201ENST00000605519 182 ntBASIC1.43□□□□□ -2.18
LHX1P48742 AC011373.1-201ENST00000607270 237 ntBASIC1.43□□□□□ -2.18
LHX1P48742 AL513423.1-201ENST00000621695 132 ntBASIC1.43□□□□□ -2.18
LHX1P48742 Y_RNA.28-201ENST00000362554 111 ntBASIC1.42□□□□□ -2.18
LHX1P48742 Y_RNA.128-201ENST00000363391 112 ntBASIC1.42□□□□□ -2.18
LHX1P48742 Y_RNA.143-201ENST00000363520 106 ntBASIC1.42□□□□□ -2.18
LHX1P48742 Y_RNA.148-201ENST00000363557 117 ntBASIC1.42□□□□□ -2.18
LHX1P48742 Y_RNA.329-201ENST00000365209 107 ntBASIC1.42□□□□□ -2.18
LHX1P48742 Y_RNA.394-201ENST00000383942 103 ntBASIC1.42□□□□□ -2.18
LHX1P48742 RN7SKP51-201ENST00000410781 304 ntBASIC1.42□□□□□ -2.18
LHX1P48742 AL354751.2-201ENST00000415471 210 ntBASIC1.42□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 144.7 ms