Protein–RNA interactions for Protein: P26640

VARS, Valine--tRNA ligase, humanhuman

Known RBP Predictions only

Length 1,264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARSP26640 HSPE1P19-201ENST00000603327 295 ntBASIC3.68□□□□□ -1.82
VARSP26640 AL137849.1-201ENST00000604767 169 ntBASIC3.68□□□□□ -1.82
VARSP26640 AC007179.3-201ENST00000604976 235 ntBASIC3.68□□□□□ -1.82
VARSP26640 DLEU2_5.2-201ENST00000610606 84 ntBASIC3.68□□□□□ -1.82
VARSP26640 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VARSP26640 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VARSP26640 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VARSP26640 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VARSP26640 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
VARSP26640 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.68□□□□□ -1.82
VARSP26640 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
VARSP26640 Y_RNA.10-201ENST00000362371 110 ntBASIC3.67□□□□□ -1.82
VARSP26640 SNORD68-201ENST00000363214 84 ntBASIC3.67□□□□□ -1.82
VARSP26640 SNORD14E-201ENST00000364009 85 ntBASIC3.67□□□□□ -1.82
VARSP26640 Y_RNA.244-201ENST00000364484 109 ntBASIC3.67□□□□□ -1.82
VARSP26640 RNU6-1276P-201ENST00000365372 104 ntBASIC3.67□□□□□ -1.82
VARSP26640 Y_RNA.507-201ENST00000384500 99 ntBASIC3.67□□□□□ -1.82
VARSP26640 AC099677.2-201ENST00000436385 175 ntBASIC3.67□□□□□ -1.82
VARSP26640 AC009969.1-201ENST00000438726 172 ntBASIC3.67□□□□□ -1.82
VARSP26640 AC106707.2-201ENST00000484182 374 ntBASIC3.67□□□□□ -1.82
VARSP26640 AC113410.1-201ENST00000505029 247 ntBASIC3.67□□□□□ -1.82
VARSP26640 RNU6-795P-201ENST00000516323 103 ntBASIC3.67□□□□□ -1.82
VARSP26640 RN7SKP83-201ENST00000516512 178 ntBASIC3.67□□□□□ -1.82
VARSP26640 SNORA18.7-201ENST00000516910 131 ntBASIC3.67□□□□□ -1.82
VARSP26640 AL161756.2-201ENST00000604597 246 ntBASIC3.67□□□□□ -1.82
VARSP26640 AL121772.2-201ENST00000614331 297 ntBASIC3.67□□□□□ -1.82
VARSP26640 U7.3-201ENST00000616123 62 ntBASIC3.67□□□□□ -1.82
VARSP26640 AC009093.8-201ENST00000641769 292 ntBASIC3.67□□□□□ -1.82
VARSP26640 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.67□□□□□ -1.82
VARSP26640 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
VARSP26640 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VARSP26640 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.66□□□□□ -1.82
VARSP26640 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
VARSP26640 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.66□□□□□ -1.82
VARSP26640 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
VARSP26640 MIR340-201ENST00000362125 95 ntBASIC3.66□□□□□ -1.82
VARSP26640 RNU6-1084P-201ENST00000362498 107 ntBASIC3.66□□□□□ -1.82
VARSP26640 SNORA1B-201ENST00000362535 133 ntBASIC3.66□□□□□ -1.82
VARSP26640 RNU6-268P-201ENST00000364174 107 ntBASIC3.66□□□□□ -1.82
VARSP26640 RNU4-16P-201ENST00000364737 141 ntBASIC3.66□□□□□ -1.82
VARSP26640 SNORA4.2-201ENST00000365313 147 ntBASIC3.66□□□□□ -1.82
VARSP26640 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
VARSP26640 AL161788.1-201ENST00000441805 169 ntBASIC3.66□□□□□ -1.82
VARSP26640 RPS12P18-201ENST00000442381 270 ntBASIC3.66□□□□□ -1.82
VARSP26640 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.66□□□□□ -1.82
VARSP26640 RNU6-65P-201ENST00000516332 98 ntBASIC3.66□□□□□ -1.82
VARSP26640 RNU1-95P-201ENST00000516357 160 ntBASIC3.66□□□□□ -1.82
VARSP26640 RNU1-128P-201ENST00000516704 160 ntBASIC3.66□□□□□ -1.82
VARSP26640 SNORA70.24-201ENST00000517233 118 ntBASIC3.66□□□□□ -1.82
VARSP26640 MIR4778-201ENST00000577635 80 ntBASIC3.66□□□□□ -1.82
VARSP26640 MIR3683-201ENST00000580847 82 ntBASIC3.66□□□□□ -1.82
VARSP26640 AC012531.4-201ENST00000616509 177 ntBASIC3.66□□□□□ -1.82
VARSP26640 FAS-AS1.2-201ENST00000620386 170 ntBASIC3.66□□□□□ -1.82
VARSP26640 AC110079.1-202ENST00000635213 138 ntBASIC3.66□□□□□ -1.82
VARSP26640 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
VARSP26640 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
VARSP26640 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.66□□□□□ -1.82
VARSP26640 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.82
VARSP26640 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.65□□□□□ -1.82
VARSP26640 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
VARSP26640 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.65□□□□□ -1.82
VARSP26640 MIR30B-201ENST00000384850 88 ntBASIC3.65□□□□□ -1.83
VARSP26640 MIR218-1-201ENST00000384999 110 ntBASIC3.65□□□□□ -1.83
VARSP26640 RNU7-80P-201ENST00000459562 61 ntBASIC3.65□□□□□ -1.83
VARSP26640 RNU6-1041P-201ENST00000516254 102 ntBASIC3.65□□□□□ -1.83
VARSP26640 RNA5SP367-201ENST00000516557 118 ntBASIC3.65□□□□□ -1.83
VARSP26640 RNU1-142P-201ENST00000516682 145 ntBASIC3.65□□□□□ -1.83
VARSP26640 MIR4425-201ENST00000580572 84 ntBASIC3.65□□□□□ -1.83
VARSP26640 UCA1.1-201ENST00000620952 75 ntBASIC3.65□□□□□ -1.83
VARSP26640 AC091932.4-201ENST00000623386 200 ntBASIC3.65□□□□□ -1.83
VARSP26640 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
VARSP26640 Y_RNA.155-201ENST00000363632 101 ntBASIC3.64□□□□□ -1.83
VARSP26640 SNORA9-201ENST00000384215 133 ntBASIC3.64□□□□□ -1.83
VARSP26640 MIR491-201ENST00000384877 84 ntBASIC3.64□□□□□ -1.83
VARSP26640 RNU6-938P-201ENST00000411285 103 ntBASIC3.64□□□□□ -1.83
VARSP26640 NDUFB9P3-201ENST00000521269 501 ntBASIC3.64□□□□□ -1.83
VARSP26640 AP003484.1-201ENST00000530974 250 ntBASIC3.64□□□□□ -1.83
VARSP26640 AP002004.2-201ENST00000531656 154 ntBASIC3.64□□□□□ -1.83
VARSP26640 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.64□□□□□ -1.83
VARSP26640 SNORA62.6-201ENST00000606322 83 ntBASIC3.64□□□□□ -1.83
VARSP26640 U3.45-201ENST00000607547 219 ntBASIC3.64□□□□□ -1.83
VARSP26640 AC087741.2-201ENST00000619415 172 ntBASIC3.64□□□□□ -1.83
VARSP26640 U6.108-201ENST00000637764 58 ntBASIC3.64□□□□□ -1.83
VARSP26640 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
VARSP26640 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
VARSP26640 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.63□□□□□ -1.83
VARSP26640 CEP170P1-201ENST00000502249 4587 ntBASIC3.63□□□□□ -1.83
VARSP26640 MIR342-201ENST00000362212 99 ntBASIC3.63□□□□□ -1.83
VARSP26640 RNU6-170P-201ENST00000362832 104 ntBASIC3.63□□□□□ -1.83
VARSP26640 SNORA5A-201ENST00000384111 134 ntBASIC3.63□□□□□ -1.83
VARSP26640 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
VARSP26640 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.63□□□□□ -1.83
VARSP26640 AC004941.2-201ENST00000427009 228 ntBASIC3.63□□□□□ -1.83
VARSP26640 RPS29P12-201ENST00000460178 152 ntBASIC3.63□□□□□ -1.83
VARSP26640 AC091826.1-201ENST00000514065 313 ntBASIC3.63□□□□□ -1.83
VARSP26640 AC008011.1-201ENST00000545989 227 ntBASIC3.63□□□□□ -1.83
VARSP26640 AC087499.8-201ENST00000578406 226 ntBASIC3.63□□□□□ -1.83
VARSP26640 AC002984.1-201ENST00000591692 448 ntBASIC3.63□□□□□ -1.83
VARSP26640 AL513534.2-201ENST00000603836 250 ntBASIC3.63□□□□□ -1.83
VARSP26640 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 162.2 ms