Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
CHMP3Q9Y3E7 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CHMP3Q9Y3E7 FAM35CP-201ENST00000554755 2470 ntBASIC3.67□□□□□ -1.82
CHMP3Q9Y3E7 AC092435.3-201ENST00000565538 3654 ntBASIC3.66□□□□□ -1.82
CHMP3Q9Y3E7 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.66□□□□□ -1.82
CHMP3Q9Y3E7 AC092185.1-201ENST00000491371 97 ntBASIC3.66□□□□□ -1.82
CHMP3Q9Y3E7 RNU6-1061P-201ENST00000516530 99 ntBASIC3.66□□□□□ -1.82
CHMP3Q9Y3E7 SCARNA11.3-201ENST00000517276 130 ntBASIC3.66□□□□□ -1.82
CHMP3Q9Y3E7 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.66□□□□□ -1.82
CHMP3Q9Y3E7 AC133485.4-201ENST00000561835 220 ntBASIC3.66□□□□□ -1.82
CHMP3Q9Y3E7 AC138907.4-201ENST00000570107 226 ntBASIC3.66□□□□□ -1.82
CHMP3Q9Y3E7 MIR3199-1-201ENST00000582434 88 ntBASIC3.66□□□□□ -1.82
CHMP3Q9Y3E7 AC131055.1-201ENST00000584626 316 ntBASIC3.66□□□□□ -1.82
CHMP3Q9Y3E7 AC107294.3-201ENST00000609211 526 ntBASIC3.66□□□□□ -1.82
CHMP3Q9Y3E7 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.66□□□□□ -1.82
CHMP3Q9Y3E7 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.66□□□□□ -1.82
CHMP3Q9Y3E7 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.65□□□□□ -1.82
CHMP3Q9Y3E7 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CHMP3Q9Y3E7 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.65□□□□□ -1.82
CHMP3Q9Y3E7 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
CHMP3Q9Y3E7 RNU2-32P-201ENST00000411193 191 ntBASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 AL135938.1-201ENST00000443141 297 ntBASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 RN7SL75P-201ENST00000461926 281 ntBASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 RNU5E-3P-201ENST00000515913 68 ntBASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 RN7SKP282-201ENST00000516824 299 ntBASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 AC011604.1-201ENST00000545978 196 ntBASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 AC097639.2-201ENST00000603159 172 ntBASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 MIR6852-201ENST00000621699 66 ntBASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 MIR7515-201ENST00000637837 67 ntBASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CHMP3Q9Y3E7 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 RNU6-309P-201ENST00000364573 106 ntBASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 RPL21P3-201ENST00000395517 478 ntBASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 MTCO1P44-201ENST00000441935 243 ntBASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 AC091826.1-201ENST00000514065 313 ntBASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 RNA5SP153-201ENST00000516498 76 ntBASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 Y_RNA.690-201ENST00000516603 95 ntBASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 RNU7-149P-201ENST00000516739 59 ntBASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
CHMP3Q9Y3E7 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 AC009487.4-201ENST00000624969 3585 ntBASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 RNU1-23P-201ENST00000363361 144 ntBASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 SNORA9.2-201ENST00000365361 133 ntBASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 MIR562-201ENST00000384894 95 ntBASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 MIR1289-1-201ENST00000408836 144 ntBASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 RPS29P12-201ENST00000460178 152 ntBASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 RN7SL633P-201ENST00000488974 297 ntBASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 RNU6-781P-201ENST00000516377 101 ntBASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 MIR3613-201ENST00000579844 87 ntBASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 AL136360.1-201ENST00000503377 1900 ntBASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.63□□□□□ -1.83
CHMP3Q9Y3E7 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 AC093831.2-201ENST00000624393 3427 ntBASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 RNU6-755P-201ENST00000364400 103 ntBASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 RNU6-1164P-201ENST00000364428 107 ntBASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 RNU6-546P-201ENST00000383991 107 ntBASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 AL357134.1-201ENST00000445848 426 ntBASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 RNU6-991P-201ENST00000516168 107 ntBASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 RNA5SP367-201ENST00000516557 118 ntBASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 GTF3AP2-201ENST00000557014 266 ntBASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 AC105245.1-201ENST00000581934 244 ntBASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 Pinc.1-201ENST00000616452 154 ntBASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 U6.95-201ENST00000636931 70 ntBASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.62□□□□□ -1.83
CHMP3Q9Y3E7 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 SNORD58C-201ENST00000365223 64 ntBASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 Y_RNA.486-201ENST00000384398 107 ntBASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 SNORA46-201ENST00000384762 135 ntBASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 AL513477.1-202ENST00000417061 214 ntBASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 RPL39P40-201ENST00000445481 146 ntBASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 RNU2-34P-201ENST00000516534 121 ntBASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 AC107016.2-201ENST00000547968 190 ntBASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 MIR2681-201ENST00000581814 105 ntBASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CHMP3Q9Y3E7 MIR340-201ENST00000362125 95 ntBASIC3.6□□□□□ -1.83
CHMP3Q9Y3E7 Y_RNA.52-201ENST00000362760 96 ntBASIC3.6□□□□□ -1.83
CHMP3Q9Y3E7 RNU6-147P-201ENST00000383983 107 ntBASIC3.6□□□□□ -1.83
CHMP3Q9Y3E7 Y_RNA.510-201ENST00000384511 114 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms