Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 U2.20-201ENST00000613956 192 ntBASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.14□□□□□ -1.91
HIF3AQ9Y2N7 ICE2P2-201ENST00000483823 2787 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 MIR30E-201ENST00000362104 92 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 RNU1-23P-201ENST00000363361 144 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 SNORD21-201ENST00000383953 95 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 MIR520G-201ENST00000385064 90 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 AL035423.1-201ENST00000420331 213 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 CYCSP4-201ENST00000429682 331 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 AC244505.4-201ENST00000434905 287 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 SSXP5-201ENST00000443473 287 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 AC010401.1-201ENST00000463867 348 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 RPL23AP67-201ENST00000465341 474 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 RN7SL601P-201ENST00000471221 293 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 RNY4P20-201ENST00000516678 93 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 AL356280.1-201ENST00000603614 379 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 U4.6-201ENST00000621618 127 ntBASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HIF3AQ9Y2N7 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 RNU6-414P-201ENST00000363705 104 ntBASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 RNA5SP173-201ENST00000364857 136 ntBASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 Y_RNA.362-201ENST00000365518 110 ntBASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 RNU6-1113P-201ENST00000384348 107 ntBASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 Y_RNA.544-201ENST00000384650 113 ntBASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 RNA5SP171-201ENST00000391071 115 ntBASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 AC006539.3-201ENST00000454258 129 ntBASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 AC006483.1-201ENST00000487308 313 ntBASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 SCGB1D5P-201ENST00000515134 247 ntBASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 RN7SKP18-201ENST00000516005 275 ntBASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 RNU6-991P-201ENST00000516168 107 ntBASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 MIR7851-201ENST00000610611 160 ntBASIC3.12□□□□□ -1.91
HIF3AQ9Y2N7 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 Y_RNA.267-201ENST00000364679 109 ntBASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 Y_RNA.323-201ENST00000365157 109 ntBASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 SNORD24-201ENST00000383884 75 ntBASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 RN7SKP111-201ENST00000410349 271 ntBASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 TRIAP1P1-201ENST00000427062 225 ntBASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 AC023141.11-201ENST00000508864 202 ntBASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 AC110768.1-201ENST00000509222 400 ntBASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 RNU6-1146P-201ENST00000516282 102 ntBASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 NDUFB9P3-201ENST00000521269 501 ntBASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 AC008507.4-201ENST00000585464 127 ntBASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.11□□□□□ -1.91
HIF3AQ9Y2N7 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 AC017071.1-201ENST00000564407 2204 ntBASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 RNU1-96P-201ENST00000364163 162 ntBASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 MIR518F-201ENST00000384973 87 ntBASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 RNU2-63P-201ENST00000410792 194 ntBASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 SNRPGP13-201ENST00000442212 177 ntBASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 MIR2276-201ENST00000516886 89 ntBASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 AC141557.1-201ENST00000540982 400 ntBASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 RNU6-94P-201ENST00000607728 107 ntBASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 MIR1245B-201ENST00000636115 69 ntBASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HIF3AQ9Y2N7 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 AL161912.2-201ENST00000565707 3007 ntBASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 MIR340-201ENST00000362125 95 ntBASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 Y_RNA.198-201ENST00000364013 98 ntBASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 RNU6-690P-201ENST00000365242 106 ntBASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 RNU11-5P-201ENST00000391216 129 ntBASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 MIR1289-1-201ENST00000408836 144 ntBASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 RNU2-48P-201ENST00000410694 191 ntBASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 AC060773.1-201ENST00000421698 310 ntBASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 RNU6-830P-201ENST00000516353 107 ntBASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 IGKV3-31-201ENST00000523109 329 ntBASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 MIR5197-201ENST00000583721 112 ntBASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 AC008739.3-201ENST00000603262 127 ntBASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.09□□□□□ -1.91
HIF3AQ9Y2N7 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.09□□□□□ -1.92
HIF3AQ9Y2N7 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.92
HIF3AQ9Y2N7 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
HIF3AQ9Y2N7 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 MIR126-201ENST00000362291 85 ntBASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 Y_RNA.213-201ENST00000364178 111 ntBASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 RNU6-573P-201ENST00000383938 106 ntBASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 MT-TI-201ENST00000387365 69 ntBASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 AC093578.1-201ENST00000415219 368 ntBASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 AP003327.1-201ENST00000529684 127 ntBASIC3.08□□□□□ -1.92
HIF3AQ9Y2N7 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 187 ms