Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MIR548O-201ENST00000408583 114 ntBASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 AC099677.2-201ENST00000436385 175 ntBASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 RNA5SP208-201ENST00000516156 78 ntBASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 MIR4762-201ENST00000585261 75 ntBASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 RNU4-35P-201ENST00000362588 141 ntBASIC3.76□□□□□ -1.81
LIMD1Q9UGP4 U8.5-201ENST00000364528 136 ntBASIC3.76□□□□□ -1.81
LIMD1Q9UGP4 Y_RNA.366-201ENST00000365540 102 ntBASIC3.76□□□□□ -1.81
LIMD1Q9UGP4 RNU6-1189P-201ENST00000383958 107 ntBASIC3.76□□□□□ -1.81
LIMD1Q9UGP4 AL117342.1-201ENST00000404861 406 ntBASIC3.76□□□□□ -1.81
LIMD1Q9UGP4 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.76□□□□□ -1.81
LIMD1Q9UGP4 RN7SL93P-201ENST00000463035 293 ntBASIC3.76□□□□□ -1.81
LIMD1Q9UGP4 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC3.76□□□□□ -1.81
LIMD1Q9UGP4 AC008011.1-201ENST00000545989 227 ntBASIC3.76□□□□□ -1.81
LIMD1Q9UGP4 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC3.76□□□□□ -1.81
LIMD1Q9UGP4 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.76□□□□□ -1.81
LIMD1Q9UGP4 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.76□□□□□ -1.81
LIMD1Q9UGP4 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 Y_RNA.49-201ENST00000362714 112 ntBASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 RNU1-18P-201ENST00000363062 164 ntBASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 snoU2-30.1-201ENST00000365012 70 ntBASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 RN7SKP284-201ENST00000411002 343 ntBASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 UBE2DNL-203ENST00000474922 222 ntBASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 RNU7-70P-201ENST00000516941 66 ntBASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 AC004486.1-201ENST00000546846 233 ntBASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 MIR7112-201ENST00000616126 65 ntBASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 U4atac.1-201ENST00000618345 95 ntBASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 AP000553.6-201ENST00000641242 118 ntBASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
LIMD1Q9UGP4 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 RNU6-1084P-201ENST00000362498 107 ntBASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 SNORD68-201ENST00000363214 84 ntBASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 MIR759-201ENST00000390224 91 ntBASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 MIR1302-5-201ENST00000408164 150 ntBASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 AC104332.2-201ENST00000429959 156 ntBASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 AC009238.1-201ENST00000442165 424 ntBASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 AC009237.6-201ENST00000446969 424 ntBASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 RNU7-28P-201ENST00000516759 62 ntBASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 CTSLP2-204ENST00000629029 392 ntBASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
LIMD1Q9UGP4 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
LIMD1Q9UGP4 Y_RNA.213-201ENST00000364178 111 ntBASIC3.73□□□□□ -1.81
LIMD1Q9UGP4 Y_RNA.336-201ENST00000365307 109 ntBASIC3.73□□□□□ -1.81
LIMD1Q9UGP4 SNORA2.2-201ENST00000365473 135 ntBASIC3.73□□□□□ -1.81
LIMD1Q9UGP4 Y_RNA.369-201ENST00000365568 117 ntBASIC3.73□□□□□ -1.81
LIMD1Q9UGP4 MIR5582-201ENST00000579697 68 ntBASIC3.73□□□□□ -1.81
LIMD1Q9UGP4 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
LIMD1Q9UGP4 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
LIMD1Q9UGP4 AL589743.1-201ENST00000551932 2712 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 RNU6-766P-201ENST00000362478 107 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 RNY4P6-201ENST00000363667 96 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 SNORD115-28-201ENST00000363931 81 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 Y_RNA.198-201ENST00000364013 98 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 SNORD114-6-201ENST00000364393 72 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 SNORD17-201ENST00000390930 237 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 RNA5SP482-201ENST00000391269 118 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 RNU6-554P-201ENST00000410466 106 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 HMGN2P32-201ENST00000444648 269 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 AL163195.1-201ENST00000496941 348 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 MIR3124-201ENST00000582636 67 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 U4.6-201ENST00000621618 127 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 ZNF720P1-201ENST00000562403 1939 ntBASIC3.72□□□□□ -1.81
LIMD1Q9UGP4 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 RNU6-461P-201ENST00000364195 107 ntBASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 RNU6-1113P-201ENST00000384348 107 ntBASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 RNU6-1072P-201ENST00000384703 107 ntBASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 RNU6-443P-201ENST00000384780 107 ntBASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 MIR1289-1-201ENST00000408836 144 ntBASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 AC107083.1-201ENST00000439643 279 ntBASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 RNU6-240P-201ENST00000516098 97 ntBASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 Z83843.1-201ENST00000604070 3685 ntBASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.82
LIMD1Q9UGP4 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
LIMD1Q9UGP4 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.7□□□□□ -1.82
LIMD1Q9UGP4 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms