Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNY3P5-201ENST00000384127 102 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-975P-201ENST00000384296 105 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 RPL23AP58-201ENST00000440453 469 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-221P-201ENST00000459541 99 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 UBL5P3-201ENST00000475112 231 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 RN7SL297P-201ENST00000483161 293 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 RPL36AP21-201ENST00000490372 323 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-971P-201ENST00000516920 106 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 IGKV3-31-201ENST00000523109 329 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 MIR3646-201ENST00000578301 84 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 MIR4524B-201ENST00000581569 115 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 AP003357.1-201ENST00000604497 148 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 UCA1.1-201ENST00000620952 75 ntBASIC3.17□□□□□ -1.9
USHBP1Q8N6Y0 RNA5SP205-201ENST00000364653 136 ntBASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-234P-201ENST00000365229 104 ntBASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 SNORD14D-201ENST00000384390 87 ntBASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 SNORA20-201ENST00000384662 132 ntBASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 RN7SKP123-201ENST00000410732 291 ntBASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 MRPS36P2-201ENST00000512569 299 ntBASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 RNU6-561P-201ENST00000516222 102 ntBASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 RNU7-116P-201ENST00000516940 62 ntBASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 POLR3GP1-201ENST00000594073 261 ntBASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 AC005972.2-201ENST00000604690 348 ntBASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 TUG1_4.1-201ENST00000619464 181 ntBASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 MIR1291-201ENST00000627649 87 ntBASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 MIR6844-201ENST00000637122 62 ntBASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.16□□□□□ -1.9
USHBP1Q8N6Y0 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.15□□□□□ -1.9
USHBP1Q8N6Y0 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
USHBP1Q8N6Y0 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
USHBP1Q8N6Y0 Y_RNA.71-201ENST00000362892 104 ntBASIC3.15□□□□□ -1.91
USHBP1Q8N6Y0 SNORD31B-201ENST00000364977 69 ntBASIC3.15□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-407P-201ENST00000365280 104 ntBASIC3.15□□□□□ -1.91
USHBP1Q8N6Y0 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.15□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-1211P-201ENST00000459179 105 ntBASIC3.15□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-948P-201ENST00000516374 107 ntBASIC3.15□□□□□ -1.91
USHBP1Q8N6Y0 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.15□□□□□ -1.91
USHBP1Q8N6Y0 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.15□□□□□ -1.91
USHBP1Q8N6Y0 AC012640.5-201ENST00000623897 319 ntBASIC3.15□□□□□ -1.91
USHBP1Q8N6Y0 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.15□□□□□ -1.91
USHBP1Q8N6Y0 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.15□□□□□ -1.91
USHBP1Q8N6Y0 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 Y_RNA.127-201ENST00000363386 109 ntBASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 Y_RNA.261-201ENST00000364631 102 ntBASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 SNORD116-13-201ENST00000384408 92 ntBASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 Y_RNA.521-201ENST00000384560 114 ntBASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 Y_RNA.542-201ENST00000384641 111 ntBASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 RPS26P55-201ENST00000471178 356 ntBASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 SCARNA17.1-201ENST00000516211 143 ntBASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 SCARNA17.2-201ENST00000516334 143 ntBASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 AL359881.1-201ENST00000602916 267 ntBASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 SCARNA17.4-201ENST00000614296 143 ntBASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 MIR6733-201ENST00000635723 61 ntBASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
USHBP1Q8N6Y0 AC009487.4-201ENST00000624969 3585 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-944P-201ENST00000364023 107 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 Y_RNA.218-201ENST00000364218 104 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 RNU1-91P-201ENST00000364746 163 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 Y_RNA.420-201ENST00000384043 110 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-1274P-201ENST00000384557 107 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 RNU4-43P-201ENST00000410628 137 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-57P-201ENST00000411348 103 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 AL135786.1-201ENST00000415892 214 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 RNU7-197P-201ENST00000458836 62 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 RNA5SP20-201ENST00000515976 84 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-586P-201ENST00000517265 104 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 AC127455.1-201ENST00000565496 145 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 AC007336.1-201ENST00000576365 3828 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 MIR1273D-201ENST00000577266 86 ntBASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.13□□□□□ -1.91
USHBP1Q8N6Y0 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.12□□□□□ -1.91
USHBP1Q8N6Y0 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
USHBP1Q8N6Y0 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
USHBP1Q8N6Y0 AC010154.1-201ENST00000425857 269 ntBASIC3.12□□□□□ -1.91
USHBP1Q8N6Y0 AC016717.1-201ENST00000448918 286 ntBASIC3.12□□□□□ -1.91
USHBP1Q8N6Y0 RPS27P1-201ENST00000450552 247 ntBASIC3.12□□□□□ -1.91
USHBP1Q8N6Y0 ATP5EP1-201ENST00000510257 156 ntBASIC3.12□□□□□ -1.91
USHBP1Q8N6Y0 RNU6-237P-201ENST00000515985 71 ntBASIC3.12□□□□□ -1.91
USHBP1Q8N6Y0 SCARNA11.3-201ENST00000517276 130 ntBASIC3.12□□□□□ -1.91
USHBP1Q8N6Y0 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.12□□□□□ -1.91
USHBP1Q8N6Y0 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.12□□□□□ -1.91
USHBP1Q8N6Y0 AC016717.2-201ENST00000609089 5141 ntBASIC3.12□□□□□ -1.91
USHBP1Q8N6Y0 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 ZNF702P-202ENST00000434269 1966 ntBASIC3.11□□□□□ -1.91
USHBP1Q8N6Y0 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.11□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms