Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 Y_RNA.99-201ENST00000363138 105 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 Y_RNA.121-201ENST00000363309 113 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 RNU4-84P-201ENST00000364200 139 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 RNU4-10P-201ENST00000364383 140 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 SNORD114-30-201ENST00000364448 72 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 Y_RNA.310-201ENST00000365063 113 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 SNORD116-18-201ENST00000383961 92 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 SNORA72.4-201ENST00000384174 132 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 AC010154.1-201ENST00000425857 269 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.23□□□□□ -1.89
USP48Q86UV5 SEPT7P4-201ENST00000437076 306 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 RNA5SP20-201ENST00000515976 84 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 AC027419.1-201ENST00000522976 328 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 AC021269.2-201ENST00000532318 330 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.23□□□□□ -1.89
USP48Q86UV5 MIR3605-201ENST00000583214 100 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 AC013791.1-201ENST00000616619 62 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
USP48Q86UV5 Y_RNA.23-201ENST00000362496 106 ntBASIC3.22□□□□□ -1.89
USP48Q86UV5 CR769767.1-201ENST00000436337 346 ntBASIC3.22□□□□□ -1.89
USP48Q86UV5 RPS27AP9-201ENST00000477681 438 ntBASIC3.22□□□□□ -1.89
USP48Q86UV5 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.22□□□□□ -1.89
USP48Q86UV5 RNU6-1337P-201ENST00000516525 95 ntBASIC3.22□□□□□ -1.89
USP48Q86UV5 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.22□□□□□ -1.89
USP48Q86UV5 ZNF861P-201ENST00000588126 639 ntBASIC3.22□□□□□ -1.89
USP48Q86UV5 AP001485.1-201ENST00000604799 199 ntBASIC3.22□□□□□ -1.89
USP48Q86UV5 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
USP48Q86UV5 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
USP48Q86UV5 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.21□□□□□ -1.89
USP48Q86UV5 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
USP48Q86UV5 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.21□□□□□ -1.9
USP48Q86UV5 MIR340-201ENST00000362125 95 ntBASIC3.21□□□□□ -1.9
USP48Q86UV5 Y_RNA.182-201ENST00000363880 111 ntBASIC3.21□□□□□ -1.9
USP48Q86UV5 RNU4-17P-201ENST00000365598 141 ntBASIC3.21□□□□□ -1.9
USP48Q86UV5 MIR626-201ENST00000385032 94 ntBASIC3.21□□□□□ -1.9
USP48Q86UV5 snoU13.23-201ENST00000458863 104 ntBASIC3.21□□□□□ -1.9
USP48Q86UV5 SCARNA8-201ENST00000515924 131 ntBASIC3.21□□□□□ -1.9
USP48Q86UV5 AC015712.3-201ENST00000559380 164 ntBASIC3.21□□□□□ -1.9
USP48Q86UV5 CTSLP2-204ENST00000629029 392 ntBASIC3.21□□□□□ -1.9
USP48Q86UV5 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
USP48Q86UV5 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
USP48Q86UV5 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.2□□□□□ -1.9
USP48Q86UV5 CENPCP1-201ENST00000533085 2578 ntBASIC3.2□□□□□ -1.9
USP48Q86UV5 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.2□□□□□ -1.9
USP48Q86UV5 Y_RNA.172-201ENST00000363765 102 ntBASIC3.2□□□□□ -1.9
USP48Q86UV5 RNU6-899P-201ENST00000363947 107 ntBASIC3.2□□□□□ -1.9
USP48Q86UV5 MIR1253-201ENST00000408273 105 ntBASIC3.2□□□□□ -1.9
USP48Q86UV5 EDDM3CP-201ENST00000415977 425 ntBASIC3.2□□□□□ -1.9
USP48Q86UV5 RPS20P10-201ENST00000451209 253 ntBASIC3.2□□□□□ -1.9
USP48Q86UV5 RPS27P22-201ENST00000478056 241 ntBASIC3.2□□□□□ -1.9
USP48Q86UV5 RNU7-121P-201ENST00000516604 62 ntBASIC3.2□□□□□ -1.9
USP48Q86UV5 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP48Q86UV5 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USP48Q86UV5 MIR26A1-201ENST00000362205 77 ntBASIC3.19□□□□□ -1.9
USP48Q86UV5 Y_RNA.400-201ENST00000383963 111 ntBASIC3.19□□□□□ -1.9
USP48Q86UV5 Y_RNA.568-201ENST00000384742 113 ntBASIC3.19□□□□□ -1.9
USP48Q86UV5 MIR764-201ENST00000390811 85 ntBASIC3.19□□□□□ -1.9
USP48Q86UV5 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.19□□□□□ -1.9
USP48Q86UV5 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC3.19□□□□□ -1.9
USP48Q86UV5 RNU7-26P-201ENST00000458980 63 ntBASIC3.19□□□□□ -1.9
USP48Q86UV5 AC010409.1-201ENST00000487382 476 ntBASIC3.19□□□□□ -1.9
USP48Q86UV5 RNU6-1146P-201ENST00000516282 102 ntBASIC3.19□□□□□ -1.9
USP48Q86UV5 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
USP48Q86UV5 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.18□□□□□ -1.9
USP48Q86UV5 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP48Q86UV5 RNU6-275P-201ENST00000364910 107 ntBASIC3.18□□□□□ -1.9
USP48Q86UV5 RNU6-449P-201ENST00000383914 107 ntBASIC3.18□□□□□ -1.9
USP48Q86UV5 SNORA26.7-201ENST00000391288 122 ntBASIC3.18□□□□□ -1.9
USP48Q86UV5 MIR1289-2-201ENST00000408360 111 ntBASIC3.18□□□□□ -1.9
USP48Q86UV5 RNU4-53P-201ENST00000410828 140 ntBASIC3.18□□□□□ -1.9
USP48Q86UV5 SNORD116-25-201ENST00000516517 92 ntBASIC3.18□□□□□ -1.9
USP48Q86UV5 RNU6-453P-201ENST00000516819 85 ntBASIC3.18□□□□□ -1.9
USP48Q86UV5 U2.20-201ENST00000613956 192 ntBASIC3.18□□□□□ -1.9
USP48Q86UV5 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.17□□□□□ -1.9
USP48Q86UV5 Y_RNA.215-201ENST00000364204 112 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 Y_RNA.497-201ENST00000384447 98 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 RNU6-160P-201ENST00000384591 107 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 MIR518C-201ENST00000384822 101 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 AL355497.1-201ENST00000406262 551 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 RN7SKP192-201ENST00000411291 327 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 AC060773.1-201ENST00000421698 310 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 AL591806.2-201ENST00000433122 173 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 HSPE1P21-201ENST00000438283 308 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 AC245102.2-201ENST00000448956 180 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 RNU7-141P-201ENST00000459304 62 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 RPL36AP21-201ENST00000490372 323 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 AC005840.1-201ENST00000498412 377 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 RNA5SP272-201ENST00000516095 111 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 AC026271.5-201ENST00000577873 130 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 MTND1P7-201ENST00000632801 297 ntBASIC3.17□□□□□ -1.9
USP48Q86UV5 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP48Q86UV5 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
USP48Q86UV5 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
USP48Q86UV5 AL356292.1-201ENST00000283110 373 ntBASIC3.16□□□□□ -1.9
USP48Q86UV5 SNORA38-201ENST00000363946 132 ntBASIC3.16□□□□□ -1.9
USP48Q86UV5 RNU6-1072P-201ENST00000384703 107 ntBASIC3.16□□□□□ -1.9
USP48Q86UV5 RNU6-443P-201ENST00000384780 107 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms