Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.54□□□□□ -1.84
RFX1P22670 RNU7-94P-201ENST00000459576 63 ntBASIC3.54□□□□□ -1.84
RFX1P22670 MIR6079-201ENST00000635807 62 ntBASIC3.54□□□□□ -1.84
RFX1P22670 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
RFX1P22670 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
RFX1P22670 SNORD56.3-201ENST00000363507 71 ntBASIC3.53□□□□□ -1.84
RFX1P22670 RNU6-1138P-201ENST00000365359 106 ntBASIC3.53□□□□□ -1.84
RFX1P22670 Y_RNA.542-201ENST00000384641 111 ntBASIC3.53□□□□□ -1.84
RFX1P22670 MIR29C-201ENST00000385231 88 ntBASIC3.53□□□□□ -1.84
RFX1P22670 RNU6-1168P-201ENST00000390831 104 ntBASIC3.53□□□□□ -1.84
RFX1P22670 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.53□□□□□ -1.84
RFX1P22670 MIR3186-201ENST00000577404 85 ntBASIC3.53□□□□□ -1.84
RFX1P22670 MIR5004-201ENST00000579078 107 ntBASIC3.53□□□□□ -1.84
RFX1P22670 MIR4662B-201ENST00000579498 81 ntBASIC3.53□□□□□ -1.84
RFX1P22670 AC097639.2-201ENST00000603159 172 ntBASIC3.53□□□□□ -1.84
RFX1P22670 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.53□□□□□ -1.84
RFX1P22670 AL365222.1-201ENST00000614661 98 ntBASIC3.53□□□□□ -1.84
RFX1P22670 AL137790.1-201ENST00000634283 177 ntBASIC3.53□□□□□ -1.84
RFX1P22670 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
RFX1P22670 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.53□□□□□ -1.85
RFX1P22670 ZNF271P-202ENST00000465539 1970 ntBASIC3.52□□□□□ -1.85
RFX1P22670 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
RFX1P22670 RNA5SP493-201ENST00000364115 91 ntBASIC3.52□□□□□ -1.85
RFX1P22670 RNU6-1164P-201ENST00000364428 107 ntBASIC3.52□□□□□ -1.85
RFX1P22670 RNU6-1154P-201ENST00000391001 104 ntBASIC3.52□□□□□ -1.85
RFX1P22670 SNORA26-201ENST00000391286 122 ntBASIC3.52□□□□□ -1.85
RFX1P22670 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
RFX1P22670 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.52□□□□□ -1.85
RFX1P22670 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.52□□□□□ -1.85
RFX1P22670 RNA5SP217-201ENST00000515959 91 ntBASIC3.52□□□□□ -1.85
RFX1P22670 RNU6-313P-201ENST00000516317 112 ntBASIC3.52□□□□□ -1.85
RFX1P22670 MIR3169-201ENST00000578032 83 ntBASIC3.52□□□□□ -1.85
RFX1P22670 AC120024.3-201ENST00000603167 156 ntBASIC3.52□□□□□ -1.85
RFX1P22670 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.52□□□□□ -1.85
RFX1P22670 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
RFX1P22670 RNU6-978P-201ENST00000364371 103 ntBASIC3.51□□□□□ -1.85
RFX1P22670 Y_RNA.621-201ENST00000411065 96 ntBASIC3.51□□□□□ -1.85
RFX1P22670 RPL32P35-201ENST00000415214 394 ntBASIC3.51□□□□□ -1.85
RFX1P22670 S100A11P2-201ENST00000467589 312 ntBASIC3.51□□□□□ -1.85
RFX1P22670 RNU1-143P-201ENST00000516296 146 ntBASIC3.51□□□□□ -1.85
RFX1P22670 RNU6-971P-201ENST00000516920 106 ntBASIC3.51□□□□□ -1.85
RFX1P22670 AC004832.5-201ENST00000608677 401 ntBASIC3.51□□□□□ -1.85
RFX1P22670 U1.23-201ENST00000610293 146 ntBASIC3.51□□□□□ -1.85
RFX1P22670 JPX_2.1-201ENST00000614161 69 ntBASIC3.51□□□□□ -1.85
RFX1P22670 RNU1-68P-201ENST00000615382 146 ntBASIC3.51□□□□□ -1.85
RFX1P22670 U1.39-201ENST00000621562 146 ntBASIC3.51□□□□□ -1.85
RFX1P22670 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.51□□□□□ -1.85
RFX1P22670 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
RFX1P22670 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
RFX1P22670 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.5□□□□□ -1.85
RFX1P22670 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
RFX1P22670 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
RFX1P22670 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
RFX1P22670 RNY1P11-201ENST00000363759 113 ntBASIC3.5□□□□□ -1.85
RFX1P22670 Y_RNA.251-201ENST00000364551 99 ntBASIC3.5□□□□□ -1.85
RFX1P22670 RNU6-1082P-201ENST00000364574 107 ntBASIC3.5□□□□□ -1.85
RFX1P22670 AC245047.4-201ENST00000433189 144 ntBASIC3.5□□□□□ -1.85
RFX1P22670 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.5□□□□□ -1.85
RFX1P22670 HMGN1P7-201ENST00000491722 313 ntBASIC3.5□□□□□ -1.85
RFX1P22670 YWHAEP4-201ENST00000505390 198 ntBASIC3.5□□□□□ -1.85
RFX1P22670 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.5□□□□□ -1.85
RFX1P22670 TUG1_4.1-201ENST00000619464 181 ntBASIC3.5□□□□□ -1.85
RFX1P22670 AP001340.1-201ENST00000624405 217 ntBASIC3.5□□□□□ -1.85
RFX1P22670 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
RFX1P22670 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
RFX1P22670 RNU6-301P-201ENST00000384277 107 ntBASIC3.49□□□□□ -1.85
RFX1P22670 SNORA22C-201ENST00000384614 134 ntBASIC3.49□□□□□ -1.85
RFX1P22670 RNU6-460P-201ENST00000391158 108 ntBASIC3.49□□□□□ -1.85
RFX1P22670 UBBP3-201ENST00000445497 241 ntBASIC3.49□□□□□ -1.85
RFX1P22670 AC233266.1-201ENST00000454518 96 ntBASIC3.49□□□□□ -1.85
RFX1P22670 RNU7-149P-201ENST00000516739 59 ntBASIC3.49□□□□□ -1.85
RFX1P22670 RN7SKP282-201ENST00000516824 299 ntBASIC3.49□□□□□ -1.85
RFX1P22670 RNU6-56P-201ENST00000516986 93 ntBASIC3.49□□□□□ -1.85
RFX1P22670 AC242852.1-201ENST00000612151 96 ntBASIC3.49□□□□□ -1.85
RFX1P22670 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.49□□□□□ -1.85
RFX1P22670 AC244015.1-201ENST00000622301 99 ntBASIC3.49□□□□□ -1.85
RFX1P22670 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.49□□□□□ -1.85
RFX1P22670 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
RFX1P22670 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
RFX1P22670 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.48□□□□□ -1.85
RFX1P22670 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
RFX1P22670 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
RFX1P22670 SNORA80A-201ENST00000363922 136 ntBASIC3.48□□□□□ -1.85
RFX1P22670 MIR539-201ENST00000365690 78 ntBASIC3.48□□□□□ -1.85
RFX1P22670 RNA5SP323-201ENST00000391094 133 ntBASIC3.48□□□□□ -1.85
RFX1P22670 RNU2-70P-201ENST00000410718 179 ntBASIC3.48□□□□□ -1.85
RFX1P22670 RNU4-47P-201ENST00000410876 114 ntBASIC3.48□□□□□ -1.85
RFX1P22670 AC008267.6-201ENST00000441664 139 ntBASIC3.48□□□□□ -1.85
RFX1P22670 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.48□□□□□ -1.85
RFX1P22670 RPS27P29-201ENST00000463110 252 ntBASIC3.48□□□□□ -1.85
RFX1P22670 RN7SL429P-201ENST00000479090 223 ntBASIC3.48□□□□□ -1.85
RFX1P22670 RN7SL489P-201ENST00000486185 223 ntBASIC3.48□□□□□ -1.85
RFX1P22670 RN7SL327P-201ENST00000488659 223 ntBASIC3.48□□□□□ -1.85
RFX1P22670 OR9P1P-201ENST00000496431 281 ntBASIC3.48□□□□□ -1.85
RFX1P22670 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.48□□□□□ -1.85
RFX1P22670 RNU6-1291P-201ENST00000516591 104 ntBASIC3.48□□□□□ -1.85
RFX1P22670 AC006023.1-201ENST00000603944 259 ntBASIC3.48□□□□□ -1.85
RFX1P22670 Pinc.1-201ENST00000616452 154 ntBASIC3.48□□□□□ -1.85
RFX1P22670 RN7SL853P-201ENST00000617250 223 ntBASIC3.48□□□□□ -1.85
RFX1P22670 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms