Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 YPEL5P2-201ENST00000605553 359 ntBASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
PCDHB3Q9Y5E6 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 SNORA60-201ENST00000362396 134 ntBASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 snoU2-30.2-201ENST00000362805 70 ntBASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 Y_RNA.95-201ENST00000363079 95 ntBASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 RNU6-887P-201ENST00000410660 100 ntBASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 RNA5SP144-201ENST00000410846 116 ntBASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 AC106707.2-201ENST00000484182 374 ntBASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 IGHVII-40-1-201ENST00000517316 58 ntBASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 AC110741.2-201ENST00000605278 268 ntBASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 MIR6075-201ENST00000620782 95 ntBASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.93□□□□□ -1.78
PCDHB3Q9Y5E6 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 SNORA1B-201ENST00000362535 133 ntBASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 RNU6-679P-201ENST00000391003 106 ntBASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 RN7SKP200-201ENST00000410564 320 ntBASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 AC123900.1-201ENST00000420390 96 ntBASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 AL512326.2-201ENST00000426359 151 ntBASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 AL049830.1-201ENST00000468034 425 ntBASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 AC093259.1-201ENST00000509755 300 ntBASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 MIR2114-201ENST00000516645 80 ntBASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 AC004812.1-201ENST00000540773 146 ntBASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 MIR5685-201ENST00000579080 79 ntBASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 MIR486-1-201ENST00000612171 68 ntBASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 Z82217.1-201ENST00000625157 8149 ntBASIC3.92□□□□□ -1.78
PCDHB3Q9Y5E6 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 MIR340-201ENST00000362125 95 ntBASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 Y_RNA.467-201ENST00000384297 102 ntBASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 MIR767-201ENST00000390228 109 ntBASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 RNA5SP171-201ENST00000391071 115 ntBASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 RNA5SP467-201ENST00000391274 118 ntBASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 AC006011.1-201ENST00000442758 349 ntBASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 PHBP14-201ENST00000512887 367 ntBASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 AC006160.2-201ENST00000637708 154 ntBASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
PCDHB3Q9Y5E6 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.9□□□□□ -1.78
PCDHB3Q9Y5E6 SNORD68-201ENST00000363214 84 ntBASIC3.9□□□□□ -1.79
PCDHB3Q9Y5E6 Y_RNA.332-201ENST00000365271 113 ntBASIC3.9□□□□□ -1.79
PCDHB3Q9Y5E6 RNU6-652P-201ENST00000365488 107 ntBASIC3.9□□□□□ -1.79
PCDHB3Q9Y5E6 Y_RNA.377-201ENST00000365644 108 ntBASIC3.9□□□□□ -1.79
PCDHB3Q9Y5E6 AC087499.4-201ENST00000448505 178 ntBASIC3.9□□□□□ -1.79
PCDHB3Q9Y5E6 MIR3944-201ENST00000581277 108 ntBASIC3.9□□□□□ -1.79
PCDHB3Q9Y5E6 MIR6500-201ENST00000622700 86 ntBASIC3.9□□□□□ -1.79
PCDHB3Q9Y5E6 U6.108-201ENST00000637764 58 ntBASIC3.9□□□□□ -1.79
PCDHB3Q9Y5E6 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.9□□□□□ -1.79
PCDHB3Q9Y5E6 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHB3Q9Y5E6 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
PCDHB3Q9Y5E6 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 SNORA7.5-201ENST00000410672 110 ntBASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 AL022718.1-201ENST00000412004 84 ntBASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 SNX2P2-201ENST00000424553 323 ntBASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 AC017083.1-201ENST00000428093 483 ntBASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 RPL29P14-201ENST00000495837 428 ntBASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 Y_RNA.659-201ENST00000515994 113 ntBASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 AP002004.2-201ENST00000531656 154 ntBASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 MIR5684-201ENST00000585074 65 ntBASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 MIR4762-201ENST00000585261 75 ntBASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 AC244505.7-201ENST00000599675 272 ntBASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
PCDHB3Q9Y5E6 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
PCDHB3Q9Y5E6 IPO8P1-201ENST00000455509 3109 ntBASIC3.88□□□□□ -1.79
PCDHB3Q9Y5E6 MAPK10-373ENST00000641983 6772 ntBASIC3.88□□□□□ -1.79
PCDHB3Q9Y5E6 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms