Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 Y_RNA.410-201ENST00000383992 113 ntBASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 SNORD77.3-201ENST00000391113 65 ntBASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 AC005326.1-201ENST00000429197 123 ntBASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 ATP5J2P3-201ENST00000451550 258 ntBASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 RPL23AP94-201ENST00000512518 302 ntBASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 AC091544.4-201ENST00000555268 342 ntBASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 AL591926.4-201ENST00000616895 298 ntBASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 MIR8057-201ENST00000620957 69 ntBASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 MIR6852-201ENST00000621699 66 ntBASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 IPO8P1-201ENST00000455509 3109 ntBASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.83□□□□□ -1.8
LIMD1Q9UGP4 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 RNU6-160P-201ENST00000384591 107 ntBASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 MIR548A2-201ENST00000384956 97 ntBASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 MIR2114-201ENST00000516645 80 ntBASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 AC007536.1-201ENST00000533382 349 ntBASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 AC007012.1-201ENST00000567192 175 ntBASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 MIR5197-201ENST00000583721 112 ntBASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 AC134878.1-201ENST00000619901 243 ntBASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LIMD1Q9UGP4 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 SNORA8-201ENST00000384574 139 ntBASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 MIR522-201ENST00000385071 87 ntBASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 MIR1183-201ENST00000408856 89 ntBASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 RNU2-27P-201ENST00000516185 142 ntBASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 SCARNA15-202ENST00000516881 127 ntBASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 MIR4513-201ENST00000581077 86 ntBASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 AL137849.1-201ENST00000604767 169 ntBASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 YPEL5P2-201ENST00000605553 359 ntBASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 U6.108-201ENST00000637764 58 ntBASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.81□□□□□ -1.8
LIMD1Q9UGP4 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 AL365361.1-201ENST00000566942 3481 ntBASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 RNU6-442P-201ENST00000383968 104 ntBASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 MIR518F-201ENST00000384973 87 ntBASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 SNORA26.7-201ENST00000391288 122 ntBASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 CST2P1-201ENST00000425770 87 ntBASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 AC017083.1-201ENST00000428093 483 ntBASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 CALM2P4-201ENST00000430810 426 ntBASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 AC025518.1-201ENST00000479856 347 ntBASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 uc_338.28-201ENST00000612082 187 ntBASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 AL449363.1-201ENST00000617815 186 ntBASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.8□□□□□ -1.8
LIMD1Q9UGP4 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 MIR450A1-201ENST00000362262 91 ntBASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 RNU6-1107P-201ENST00000364817 104 ntBASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 SNORA25B-201ENST00000365507 128 ntBASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 Y_RNA.500-201ENST00000384466 111 ntBASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 RNU6-220P-201ENST00000390919 107 ntBASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 AC018868.1-201ENST00000491307 315 ntBASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 RPS26P48-201ENST00000491713 339 ntBASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 Y_RNA.677-201ENST00000516401 85 ntBASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 SNORA70.18-201ENST00000516696 98 ntBASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 MIR7851-201ENST00000610611 160 ntBASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
LIMD1Q9UGP4 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 SNORA1B-201ENST00000362535 133 ntBASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 Y_RNA.85-201ENST00000363014 111 ntBASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 SNORD14E-201ENST00000364009 85 ntBASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 SNORD21-201ENST00000383953 95 ntBASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 RNA5SP424-201ENST00000390988 115 ntBASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 RNU6-537P-201ENST00000517277 103 ntBASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 AC110741.2-201ENST00000605278 268 ntBASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 AC006441.5-201ENST00000612680 209 ntBASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 AC106754.2-201ENST00000623006 233 ntBASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 MIR4679-1-201ENST00000637619 75 ntBASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
LIMD1Q9UGP4 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.81
LIMD1Q9UGP4 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 RNU6-106P-201ENST00000384405 107 ntBASIC3.77□□□□□ -1.81
LIMD1Q9UGP4 SNORD12C-201ENST00000386307 89 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms