Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AC006435.5-201ENST00000624486 112 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-199P-201ENST00000362954 107 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 Y_RNA.124-201ENST00000363339 93 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-454P-201ENST00000364292 107 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-1264P-201ENST00000383891 107 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-318P-201ENST00000384283 103 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-424P-201ENST00000384367 105 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-376P-201ENST00000384731 106 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 MIR19B1-201ENST00000384829 87 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 MIR146A-201ENST00000385201 99 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-700P-201ENST00000391043 107 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 MTND3P10-201ENST00000450967 341 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 AC233266.1-201ENST00000454518 96 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 AC108729.3-201ENST00000513484 108 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 RNU7-12P-201ENST00000516030 62 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 RN7SKP49-201ENST00000516675 260 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-63P-201ENST00000516690 95 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 RNU2-56P-201ENST00000516826 190 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 AC105029.1-201ENST00000520250 669 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 AC091178.2-201ENST00000584401 117 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 SNORA28-201ENST00000606769 126 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 GHRLOS.1-201ENST00000610995 70 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 AC242852.1-201ENST00000612151 96 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 AC104260.1-201ENST00000616660 539 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 AC002553.4-201ENST00000616896 331 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 AC244015.1-201ENST00000622301 99 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 U6.115-201ENST00000636045 103 ntBASIC0.76□□□□□ -2.29
EXOSC4Q9NPD3 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 Y_RNA.363-201ENST00000365529 113 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-601P-201ENST00000384540 107 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 MIR532-201ENST00000385025 91 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-510P-201ENST00000391239 108 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 MTCYBP4-201ENST00000401524 249 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 MTND3P8-201ENST00000412909 339 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 POLR2J4-204ENST00000418424 324 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 AC092423.1-201ENST00000430165 186 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 AC104332.1-201ENST00000440471 797 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-120P-201ENST00000516077 103 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 SCARNA16.2-201ENST00000516520 172 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-1213P-201ENST00000517075 94 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 AF235103.2-201ENST00000525753 346 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 AC136932.1-201ENST00000574771 208 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 AL117336.2-201ENST00000602435 335 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 AC084782.3-201ENST00000612282 578 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 MIR1244-1-201ENST00000612829 85 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 MIR1244-3-201ENST00000635744 85 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 MIR1244-2-201ENST00000636449 85 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 MIR1244-4-202ENST00000636813 85 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 AC073869.6-201ENST00000640656 341 ntBASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.75□□□□□ -2.29
EXOSC4Q9NPD3 RNU1-36P-201ENST00000365130 165 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 Y_RNA.339-201ENST00000365325 102 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 MIR100-201ENST00000385259 80 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 MIR653-201ENST00000385279 96 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 MIR1277-201ENST00000408536 78 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 AC006461.1-201ENST00000412637 326 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 AC114482.1-201ENST00000418010 247 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 MTCYBP10-201ENST00000424905 650 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 Z98949.2-201ENST00000440996 144 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 AL137792.2-201ENST00000443484 235 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-625P-201ENST00000459412 107 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 TRMT112P2-201ENST00000512910 132 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 Y_RNA.708-201ENST00000516950 96 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-341P-201ENST00000516973 96 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 AC090049.2-201ENST00000550377 109 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 MIR4498-201ENST00000577599 66 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 BNIP3P10-201ENST00000605360 577 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.74□□□□□ -2.29
EXOSC4Q9NPD3 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.73□□□□□ -2.29
EXOSC4Q9NPD3 MIRLET7C-201ENST00000362160 84 ntBASIC0.73□□□□□ -2.29
EXOSC4Q9NPD3 Y_RNA.88-201ENST00000363029 99 ntBASIC0.73□□□□□ -2.29
EXOSC4Q9NPD3 RNA5SP475-201ENST00000410568 110 ntBASIC0.73□□□□□ -2.29
EXOSC4Q9NPD3 SNORD124-201ENST00000459577 104 ntBASIC0.73□□□□□ -2.29
EXOSC4Q9NPD3 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.73□□□□□ -2.29
EXOSC4Q9NPD3 SNORA40.9-201ENST00000515895 93 ntBASIC0.73□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-237P-201ENST00000515985 71 ntBASIC0.73□□□□□ -2.29
EXOSC4Q9NPD3 MIR6857-201ENST00000613267 93 ntBASIC0.73□□□□□ -2.29
EXOSC4Q9NPD3 AC127459.3-201ENST00000624328 466 ntBASIC0.73□□□□□ -2.29
EXOSC4Q9NPD3 MIR3674-201ENST00000636576 68 ntBASIC0.73□□□□□ -2.29
EXOSC4Q9NPD3 RNU4-79P-201ENST00000362764 141 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 RNU4-41P-201ENST00000364426 143 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-99P-201ENST00000364721 107 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-1080P-201ENST00000383982 107 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 AL451046.2-201ENST00000403074 277 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-1054P-201ENST00000411293 104 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 RPL23AP50-201ENST00000434149 455 ntBASIC0.72□□□□□ -2.29
EXOSC4Q9NPD3 AC002429.1-201ENST00000437672 148 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 334.8 ms