Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 RNU6-861P-201ENST00000516745 106 ntBASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 AC068647.2-201ENST00000637380 353 ntBASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 CENPCP1-201ENST00000533085 2578 ntBASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
PCIF1Q9H4Z3 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 RNU4-10P-201ENST00000364383 140 ntBASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 HMGN2P34-201ENST00000437647 269 ntBASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 HSPE1P21-201ENST00000438283 308 ntBASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 AC011406.1-201ENST00000512440 370 ntBASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 SUMO2P18-201ENST00000518873 252 ntBASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 MIR3162-201ENST00000581818 82 ntBASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 MIR4438-201ENST00000585271 93 ntBASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 RPL12P50-201ENST00000603116 116 ntBASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.7□□□□□ -1.98
PCIF1Q9H4Z3 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 RNU1-22P-201ENST00000363334 158 ntBASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 RNA5SP456-201ENST00000364002 114 ntBASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 U8.7-201ENST00000364940 136 ntBASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 RNU4-17P-201ENST00000365598 141 ntBASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 MIR1253-201ENST00000408273 105 ntBASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 AC097462.1-201ENST00000514125 324 ntBASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 AC072026.1-201ENST00000605023 201 ntBASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 AC022202.1-201ENST00000613515 211 ntBASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 MIR548AY-201ENST00000617669 107 ntBASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 U4.3-201ENST00000621047 82 ntBASIC2.69□□□□□ -1.98
PCIF1Q9H4Z3 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 snoU2-30.2-201ENST00000362805 70 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 Y_RNA.180-201ENST00000363867 113 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 Y_RNA.233-201ENST00000364407 101 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 Y_RNA.293-201ENST00000364908 93 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 Y_RNA.435-201ENST00000384095 112 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 RNU1-148P-201ENST00000384472 162 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 RNU4-70P-201ENST00000384579 139 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 RNU6-160P-201ENST00000384591 107 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 EDDM3CP-201ENST00000415977 425 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 AL353689.1-201ENST00000438895 199 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 AC117454.1-201ENST00000491120 168 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 RNU6-1041P-201ENST00000516254 102 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 RNU7-115P-201ENST00000516433 55 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 AC015720.1-201ENST00000565251 277 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 MIR4658-201ENST00000584344 65 ntBASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
PCIF1Q9H4Z3 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 SNORA25.6-201ENST00000364121 118 ntBASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 RNU6-417P-201ENST00000384712 107 ntBASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 RN7SKP51-201ENST00000410781 304 ntBASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 AL135786.1-201ENST00000415892 214 ntBASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 RNU1-131P-201ENST00000458943 161 ntBASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 RPL36AP21-201ENST00000490372 323 ntBASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 AC074198.2-201ENST00000508153 258 ntBASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 CYCSP26-201ENST00000534107 320 ntBASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 AL137100.2-201ENST00000555786 315 ntBASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 MIR4672-201ENST00000583126 81 ntBASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 AP003357.1-201ENST00000604497 148 ntBASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 U6.73-201ENST00000619194 103 ntBASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
PCIF1Q9H4Z3 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.66□□□□□ -1.98
PCIF1Q9H4Z3 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
PCIF1Q9H4Z3 RNU6-1205P-201ENST00000363625 106 ntBASIC2.66□□□□□ -1.98
PCIF1Q9H4Z3 RNA5SP511-201ENST00000410487 115 ntBASIC2.66□□□□□ -1.98
PCIF1Q9H4Z3 RNU6-1219P-201ENST00000516143 112 ntBASIC2.66□□□□□ -1.98
PCIF1Q9H4Z3 RNU7-172P-201ENST00000517125 64 ntBASIC2.66□□□□□ -1.98
PCIF1Q9H4Z3 AC005972.2-201ENST00000604690 348 ntBASIC2.66□□□□□ -1.98
PCIF1Q9H4Z3 AL353149.1-201ENST00000610667 244 ntBASIC2.66□□□□□ -1.98
PCIF1Q9H4Z3 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.66□□□□□ -1.98
PCIF1Q9H4Z3 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.66□□□□□ -1.98
PCIF1Q9H4Z3 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.66□□□□□ -1.98
PCIF1Q9H4Z3 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.65□□□□□ -1.98
PCIF1Q9H4Z3 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
PCIF1Q9H4Z3 RNU6-1164P-201ENST00000364428 107 ntBASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 RNU6-1062P-201ENST00000383908 107 ntBASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 RNU6-1323P-201ENST00000384025 107 ntBASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 Y_RNA.571-201ENST00000384753 98 ntBASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 Y_RNA.572-201ENST00000384757 98 ntBASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 SNORA40.19-201ENST00000390846 128 ntBASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 RNU6-381P-201ENST00000391259 108 ntBASIC2.65□□□□□ -1.99
PCIF1Q9H4Z3 AL359511.1-201ENST00000402970 211 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms