Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 Y_RNA.796-201ENST00000364268 102 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 RNU6-1305P-201ENST00000364353 104 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.799-201ENST00000364992 102 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.327-201ENST00000365201 102 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 SNORA63.7-201ENST00000365579 123 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 RNU6-418P-201ENST00000384035 107 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 RNU6-20P-201ENST00000384106 107 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 RNU6-937P-201ENST00000384325 106 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.526-201ENST00000384572 110 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 RNU6-1109P-201ENST00000391187 107 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 RN7SKP101-201ENST00000411376 320 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 RAB28P5-201ENST00000427490 651 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 AC005002.2-201ENST00000438228 269 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 RPL23AP6-201ENST00000446637 472 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 AC098869.1-201ENST00000481627 292 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 AC074133.1-201ENST00000515696 183 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 MIR4299-201ENST00000577899 72 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
UPF3AQ9H1J1 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.64-201ENST00000362845 102 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.101-201ENST00000363154 102 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 SNORD114-6-201ENST00000364393 72 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.276-201ENST00000364732 109 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.355-201ENST00000365462 98 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 RNU6-975P-201ENST00000384296 105 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 SNORA67.6-201ENST00000391093 99 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 RNU6-1199P-201ENST00000411249 104 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 RPL21P38-201ENST00000418090 167 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 RPL31P63-201ENST00000422565 375 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 AL137159.1-201ENST00000452808 512 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 LINC01399-202ENST00000458450 244 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 RNU6-625P-201ENST00000459412 107 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 AC025465.3-201ENST00000510570 311 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 MIR4300-201ENST00000581016 96 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 AL162730.1-201ENST00000605734 292 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
UPF3AQ9H1J1 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 U3.8-201ENST00000363675 217 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 RNU5F-3P-201ENST00000363767 117 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.183-201ENST00000363882 113 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 RNU4-13P-201ENST00000364019 141 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 RNU6-1164P-201ENST00000364428 107 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.439-201ENST00000384119 94 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 RNU6-102P-201ENST00000384485 104 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 MIR215-201ENST00000384858 110 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 MIR517C-201ENST00000385103 95 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 SNORD115-46-201ENST00000390982 71 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 MIR300-201ENST00000401138 83 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 AL357139.1-201ENST00000407792 426 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 AC016909.1-201ENST00000415916 166 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 AC123900.1-201ENST00000420390 96 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 MTND3P2-201ENST00000438452 342 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 NDUFB4P10-201ENST00000452541 359 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 CYCSP23-201ENST00000519781 313 ntBASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.75□□□□□ -2.13
UPF3AQ9H1J1 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.19-201ENST00000362462 99 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 snoU2_19.2-201ENST00000363024 80 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 RNU6-770P-201ENST00000363929 105 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.269-201ENST00000364685 89 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.286-201ENST00000364813 102 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 RNU6-1264P-201ENST00000383891 107 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 SNORD14D-201ENST00000384390 87 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.498-201ENST00000384460 102 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 RNU6-1026P-201ENST00000384465 108 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.570-201ENST00000384750 101 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 MIR1323-201ENST00000408090 73 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 MIR1185-2-201ENST00000408687 86 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 MIR1276-201ENST00000408707 83 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 SRIP3-201ENST00000413200 219 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 EDDM3CP-201ENST00000415977 425 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 AC139712.2-201ENST00000424302 339 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 DYNLT3P2-201ENST00000442517 295 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 RPL23AP3-201ENST00000453844 468 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 RNU7-57P-201ENST00000459540 60 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 RNU6-635P-201ENST00000516651 102 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 AC008269.2-201ENST00000561915 1105 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.772-201ENST00000606692 102 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 AC004467.1-201ENST00000615678 330 ntBASIC1.74□□□□□ -2.13
UPF3AQ9H1J1 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 SNORD81.1-201ENST00000363064 77 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.116-201ENST00000363292 103 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 SNORA7.1-201ENST00000363750 139 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 SNORD63-201ENST00000384262 68 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 RNU6-574P-201ENST00000384265 107 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 138.7 ms