Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AL139156.1-201ENST00000412785 841 ntBASIC3.3□□□□□ -1.88
TRAIPQ9BWF2 UQCRHP3-201ENST00000451503 251 ntBASIC3.3□□□□□ -1.88
TRAIPQ9BWF2 RN7SL75P-201ENST00000461926 281 ntBASIC3.3□□□□□ -1.88
TRAIPQ9BWF2 AC091021.1-201ENST00000468051 388 ntBASIC3.3□□□□□ -1.88
TRAIPQ9BWF2 Y_RNA.700-201ENST00000516806 100 ntBASIC3.3□□□□□ -1.88
TRAIPQ9BWF2 MIR4724-201ENST00000579485 89 ntBASIC3.3□□□□□ -1.88
TRAIPQ9BWF2 AC096644.4-201ENST00000563417 2912 ntBASIC3.3□□□□□ -1.88
TRAIPQ9BWF2 AC093831.2-201ENST00000624393 3427 ntBASIC3.3□□□□□ -1.88
TRAIPQ9BWF2 SNORA33-201ENST00000363664 130 ntBASIC3.29□□□□□ -1.88
TRAIPQ9BWF2 SNORA48.1-201ENST00000390879 135 ntBASIC3.29□□□□□ -1.88
TRAIPQ9BWF2 AC011604.1-201ENST00000545978 196 ntBASIC3.29□□□□□ -1.88
TRAIPQ9BWF2 Z83818.1-201ENST00000603584 150 ntBASIC3.29□□□□□ -1.88
TRAIPQ9BWF2 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.29□□□□□ -1.88
TRAIPQ9BWF2 MIR7106-201ENST00000612419 65 ntBASIC3.29□□□□□ -1.88
TRAIPQ9BWF2 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.29□□□□□ -1.88
TRAIPQ9BWF2 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
TRAIPQ9BWF2 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 SNORD23.1-201ENST00000408212 104 ntBASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 EEF1A1P41-201ENST00000414667 207 ntBASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 MTND5P15-201ENST00000434246 349 ntBASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 MTND2P29-201ENST00000438595 412 ntBASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 RPS4XP11-201ENST00000446897 772 ntBASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 RPS26P45-201ENST00000471748 340 ntBASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 RNU6-341P-201ENST00000516973 96 ntBASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 RNU7-128P-201ENST00000517247 62 ntBASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 AC084364.2-201ENST00000546924 395 ntBASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 AC107016.2-201ENST00000547968 190 ntBASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 MIR2681-201ENST00000581814 105 ntBASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 AL137790.1-201ENST00000634283 177 ntBASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
TRAIPQ9BWF2 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 RNA5SP393-201ENST00000363423 117 ntBASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 Y_RNA.308-201ENST00000365043 101 ntBASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 Y_RNA.793-201ENST00000411222 111 ntBASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 RNU6-437P-201ENST00000459408 95 ntBASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 TRBV12-1-201ENST00000479785 344 ntBASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 RN7SL499P-201ENST00000481141 276 ntBASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 RNU6-138P-201ENST00000515952 107 ntBASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 RNU2-56P-201ENST00000516826 190 ntBASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 MIR6852-201ENST00000621699 66 ntBASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.27□□□□□ -1.89
TRAIPQ9BWF2 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.26□□□□□ -1.89
TRAIPQ9BWF2 MIR411-201ENST00000362239 96 ntBASIC3.26□□□□□ -1.89
TRAIPQ9BWF2 RNA5SP501-201ENST00000410990 112 ntBASIC3.26□□□□□ -1.89
TRAIPQ9BWF2 AC011753.1-201ENST00000451001 220 ntBASIC3.26□□□□□ -1.89
TRAIPQ9BWF2 AC023449.1-201ENST00000454464 154 ntBASIC3.26□□□□□ -1.89
TRAIPQ9BWF2 RNU2-19P-201ENST00000517288 84 ntBASIC3.26□□□□□ -1.89
TRAIPQ9BWF2 MIR5688-201ENST00000580619 83 ntBASIC3.26□□□□□ -1.89
TRAIPQ9BWF2 MIR4513-201ENST00000581077 86 ntBASIC3.26□□□□□ -1.89
TRAIPQ9BWF2 AC022513.1-201ENST00000624512 117 ntBASIC3.26□□□□□ -1.89
TRAIPQ9BWF2 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.26□□□□□ -1.89
TRAIPQ9BWF2 U6.108-201ENST00000637764 58 ntBASIC3.26□□□□□ -1.89
TRAIPQ9BWF2 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.26□□□□□ -1.89
TRAIPQ9BWF2 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 Y_RNA.29-201ENST00000362570 113 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 RNU6-1020P-201ENST00000363684 107 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 Y_RNA.500-201ENST00000384466 111 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 RNU6-950P-201ENST00000384651 107 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 MIR520A-201ENST00000384862 85 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 AL512604.1-201ENST00000404812 257 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 RNA5SP450-201ENST00000411206 102 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 AL135938.1-201ENST00000443141 297 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 RN7SL297P-201ENST00000483161 293 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 RN7SKP43-201ENST00000516173 320 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 RNU6-1291P-201ENST00000516591 104 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 RNU6-182P-201ENST00000516970 105 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 AL358944.1-201ENST00000528537 144 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 AP002004.2-201ENST00000531656 154 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 ELOCP29-201ENST00000588193 334 ntBASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
TRAIPQ9BWF2 RNU4-17P-201ENST00000365598 141 ntBASIC3.24□□□□□ -1.89
TRAIPQ9BWF2 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
TRAIPQ9BWF2 AC245047.3-201ENST00000429428 127 ntBASIC3.24□□□□□ -1.89
TRAIPQ9BWF2 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.24□□□□□ -1.89
TRAIPQ9BWF2 RNVU1-2-201ENST00000516326 135 ntBASIC3.24□□□□□ -1.89
TRAIPQ9BWF2 RNA5SP367-201ENST00000516557 118 ntBASIC3.24□□□□□ -1.89
TRAIPQ9BWF2 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
TRAIPQ9BWF2 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.24□□□□□ -1.89
TRAIPQ9BWF2 AC100821.1-201ENST00000523153 2479 ntBASIC3.24□□□□□ -1.89
TRAIPQ9BWF2 MIR526A2-201ENST00000390198 65 ntBASIC3.23□□□□□ -1.89
TRAIPQ9BWF2 SNORA11.2-201ENST00000408318 127 ntBASIC3.23□□□□□ -1.89
TRAIPQ9BWF2 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.23□□□□□ -1.89
TRAIPQ9BWF2 Y_RNA.644-201ENST00000459006 113 ntBASIC3.23□□□□□ -1.89
TRAIPQ9BWF2 RNA5SP57-201ENST00000459463 123 ntBASIC3.23□□□□□ -1.89
TRAIPQ9BWF2 HMGB3P3-201ENST00000510526 400 ntBASIC3.23□□□□□ -1.89
TRAIPQ9BWF2 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.23□□□□□ -1.89
TRAIPQ9BWF2 Y_RNA.674-201ENST00000516362 113 ntBASIC3.23□□□□□ -1.89
TRAIPQ9BWF2 Y_RNA.714-201ENST00000517065 90 ntBASIC3.23□□□□□ -1.89
TRAIPQ9BWF2 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.23□□□□□ -1.89
TRAIPQ9BWF2 JPX_2.1-201ENST00000614161 69 ntBASIC3.23□□□□□ -1.89
TRAIPQ9BWF2 AC012640.5-201ENST00000623897 319 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms