Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC140Q96MF4 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC140Q96MF4 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC140Q96MF4 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC140Q96MF4 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
CCDC140Q96MF4 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC140Q96MF4 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC140Q96MF4 RNU6-1336P-201ENST00000383886 109 ntBASIC2.62□□□□□ -1.99
CCDC140Q96MF4 RNU6-484P-201ENST00000384016 107 ntBASIC2.62□□□□□ -1.99
CCDC140Q96MF4 MIR34B-201ENST00000385076 84 ntBASIC2.62□□□□□ -1.99
CCDC140Q96MF4 RNA5SP109-201ENST00000391010 116 ntBASIC2.62□□□□□ -1.99
CCDC140Q96MF4 RPL23AP83-201ENST00000434984 473 ntBASIC2.62□□□□□ -1.99
CCDC140Q96MF4 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC140Q96MF4 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC140Q96MF4 RPS26P45-201ENST00000471748 340 ntBASIC2.62□□□□□ -1.99
CCDC140Q96MF4 AC110768.1-201ENST00000509222 400 ntBASIC2.62□□□□□ -1.99
CCDC140Q96MF4 SNORD77.4-201ENST00000516158 81 ntBASIC2.62□□□□□ -1.99
CCDC140Q96MF4 IGKV2-26-201ENST00000518305 343 ntBASIC2.62□□□□□ -1.99
CCDC140Q96MF4 NDUFB9P3-201ENST00000521269 501 ntBASIC2.62□□□□□ -1.99
CCDC140Q96MF4 AC005786.1-201ENST00000588553 154 ntBASIC2.62□□□□□ -1.99
CCDC140Q96MF4 AC022217.4-201ENST00000604389 163 ntBASIC2.62□□□□□ -1.99
CCDC140Q96MF4 AL591926.4-201ENST00000616895 298 ntBASIC2.62□□□□□ -1.99
CCDC140Q96MF4 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC140Q96MF4 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC140Q96MF4 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC140Q96MF4 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC140Q96MF4 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.62□□□□□ -1.99
CCDC140Q96MF4 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC140Q96MF4 AC017071.1-201ENST00000564407 2204 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC140Q96MF4 Y_RNA.91-201ENST00000363042 107 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 SNORD68-201ENST00000363214 84 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 Y_RNA.393-201ENST00000383936 102 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 Y_RNA.486-201ENST00000384398 107 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 MIR562-201ENST00000384894 95 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 RPL30P13-201ENST00000418873 348 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC140Q96MF4 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC140Q96MF4 HMGN2P3-201ENST00000433603 273 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 HMGN2P5-201ENST00000436882 273 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 AL606517.2-201ENST00000442855 241 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC140Q96MF4 NDUFA4P2-201ENST00000489989 244 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 RNA5SP137-201ENST00000516833 135 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 AP002004.2-201ENST00000531656 154 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC140Q96MF4 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC140Q96MF4 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC140Q96MF4 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.61□□□□□ -1.99
CCDC140Q96MF4 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.61□□□□□ -1.99
CCDC140Q96MF4 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC2.61□□□□□ -1.99
CCDC140Q96MF4 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC140Q96MF4 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC140Q96MF4 RNA5SP72-201ENST00000364442 117 ntBASIC2.6□□□□□ -1.99
CCDC140Q96MF4 Y_RNA.634-201ENST00000364811 113 ntBASIC2.6□□□□□ -1.99
CCDC140Q96MF4 MIR490-201ENST00000384865 128 ntBASIC2.6□□□□□ -1.99
CCDC140Q96MF4 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC140Q96MF4 AC010401.1-201ENST00000463867 348 ntBASIC2.6□□□□□ -1.99
CCDC140Q96MF4 AC084364.2-201ENST00000546924 395 ntBASIC2.6□□□□□ -1.99
CCDC140Q96MF4 AC120024.3-201ENST00000603167 156 ntBASIC2.6□□□□□ -1.99
CCDC140Q96MF4 AC007179.3-201ENST00000604976 235 ntBASIC2.6□□□□□ -1.99
CCDC140Q96MF4 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC140Q96MF4 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
CCDC140Q96MF4 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC140Q96MF4 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC140Q96MF4 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC140Q96MF4 RNU6-525P-201ENST00000363685 104 ntBASIC2.59□□□□□ -1.99
CCDC140Q96MF4 RNU6-1082P-201ENST00000364574 107 ntBASIC2.59□□□□□ -1.99
CCDC140Q96MF4 MIR518A2-201ENST00000384966 87 ntBASIC2.59□□□□□ -1.99
CCDC140Q96MF4 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
CCDC140Q96MF4 AC245047.3-201ENST00000429428 127 ntBASIC2.59□□□□□ -1.99
CCDC140Q96MF4 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC140Q96MF4 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.59□□□□□ -1.99
CCDC140Q96MF4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC140Q96MF4 MIR4276-201ENST00000584832 70 ntBASIC2.59□□□□□ -1.99
CCDC140Q96MF4 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.59□□□□□ -2
CCDC140Q96MF4 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -2
CCDC140Q96MF4 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
CCDC140Q96MF4 AL161431.1-201ENST00000618966 4205 ntBASIC2.58□□□□□ -2
CCDC140Q96MF4 AC010332.2-201ENST00000613083 1904 ntBASIC2.58□□□□□ -2
CCDC140Q96MF4 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC140Q96MF4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC140Q96MF4 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC2.58□□□□□ -2
CCDC140Q96MF4 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC140Q96MF4 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC140Q96MF4 RNU1-70P-201ENST00000362618 164 ntBASIC2.58□□□□□ -2
CCDC140Q96MF4 RNA5SP50-201ENST00000363731 107 ntBASIC2.58□□□□□ -2
CCDC140Q96MF4 Y_RNA.265-201ENST00000364677 108 ntBASIC2.58□□□□□ -2
CCDC140Q96MF4 SNORD72-201ENST00000390994 80 ntBASIC2.58□□□□□ -2
CCDC140Q96MF4 RNU6-257P-201ENST00000410238 98 ntBASIC2.58□□□□□ -2
CCDC140Q96MF4 RN7SL293P-201ENST00000481765 281 ntBASIC2.58□□□□□ -2
CCDC140Q96MF4 RN7SL297P-201ENST00000483161 293 ntBASIC2.58□□□□□ -2
CCDC140Q96MF4 MRPS17P9-201ENST00000511924 393 ntBASIC2.58□□□□□ -2
CCDC140Q96MF4 AL358944.1-201ENST00000528537 144 ntBASIC2.58□□□□□ -2
CCDC140Q96MF4 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.58□□□□□ -2
CCDC140Q96MF4 AL161756.2-201ENST00000604597 246 ntBASIC2.58□□□□□ -2
CCDC140Q96MF4 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.58□□□□□ -2
CCDC140Q96MF4 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC140Q96MF4 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.58□□□□□ -2
CCDC140Q96MF4 AL355596.1-201ENST00000565399 3996 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms