Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.3□□□□□ -1.88
USP48Q86UV5 RNU6-818P-201ENST00000364837 108 ntBASIC3.29□□□□□ -1.88
USP48Q86UV5 SNORA26.5-201ENST00000391215 123 ntBASIC3.29□□□□□ -1.88
USP48Q86UV5 AL355796.1-201ENST00000406706 323 ntBASIC3.29□□□□□ -1.88
USP48Q86UV5 MTCO1P44-201ENST00000441935 243 ntBASIC3.29□□□□□ -1.88
USP48Q86UV5 AC009238.1-201ENST00000442165 424 ntBASIC3.29□□□□□ -1.88
USP48Q86UV5 AC009237.6-201ENST00000446969 424 ntBASIC3.29□□□□□ -1.88
USP48Q86UV5 SNORD65B-201ENST00000459126 73 ntBASIC3.29□□□□□ -1.88
USP48Q86UV5 SNORA4.4-201ENST00000515921 135 ntBASIC3.29□□□□□ -1.88
USP48Q86UV5 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.29□□□□□ -1.88
USP48Q86UV5 AC136628.3-201ENST00000521868 290 ntBASIC3.29□□□□□ -1.88
USP48Q86UV5 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.29□□□□□ -1.88
USP48Q86UV5 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.29□□□□□ -1.88
USP48Q86UV5 AL078604.3-201ENST00000615580 211 ntBASIC3.29□□□□□ -1.88
USP48Q86UV5 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP48Q86UV5 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.28□□□□□ -1.88
USP48Q86UV5 Y_RNA.238-201ENST00000364441 102 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 Y_RNA.272-201ENST00000364696 102 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 Y_RNA.368-201ENST00000365547 113 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 Y_RNA.412-201ENST00000384001 104 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 RNU2-2P-201ENST00000410396 191 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 RPL23AP7-203ENST00000449021 469 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 RN7SL499P-201ENST00000481141 276 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 RPS29P21-201ENST00000496272 170 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 RNU2-4P-201ENST00000606190 192 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.28□□□□□ -1.88
USP48Q86UV5 U2.15-201ENST00000611544 191 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 U2.16-201ENST00000613119 191 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 U2.12-201ENST00000613778 191 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 U2.9-201ENST00000615427 191 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 U2.11-201ENST00000616345 191 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 U2.2-201ENST00000616535 191 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 U2.3-201ENST00000617785 191 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 U2.19-201ENST00000618602 191 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 RNU2-1-201ENST00000618664 191 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 U2.6-201ENST00000619225 191 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 U2.5-201ENST00000619465 191 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 U2.10-201ENST00000620268 191 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 AC006435.5-201ENST00000624486 112 ntBASIC3.28□□□□□ -1.88
USP48Q86UV5 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.28□□□□□ -1.88
USP48Q86UV5 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.28□□□□□ -1.88
USP48Q86UV5 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
USP48Q86UV5 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.27□□□□□ -1.89
USP48Q86UV5 RNU6-1240P-201ENST00000365155 104 ntBASIC3.27□□□□□ -1.89
USP48Q86UV5 Y_RNA.341-201ENST00000365341 102 ntBASIC3.27□□□□□ -1.89
USP48Q86UV5 Y_RNA.456-201ENST00000384232 111 ntBASIC3.27□□□□□ -1.89
USP48Q86UV5 RNA5SP492-201ENST00000411330 114 ntBASIC3.27□□□□□ -1.89
USP48Q86UV5 SRIP3-201ENST00000413200 219 ntBASIC3.27□□□□□ -1.89
USP48Q86UV5 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.27□□□□□ -1.89
USP48Q86UV5 AC003982.1-202ENST00000469928 248 ntBASIC3.27□□□□□ -1.89
USP48Q86UV5 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.27□□□□□ -1.89
USP48Q86UV5 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.27□□□□□ -1.89
USP48Q86UV5 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.27□□□□□ -1.89
USP48Q86UV5 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.27□□□□□ -1.89
USP48Q86UV5 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.26□□□□□ -1.89
USP48Q86UV5 Y_RNA.7-201ENST00000362352 102 ntBASIC3.26□□□□□ -1.89
USP48Q86UV5 SNORA27.1-201ENST00000362604 124 ntBASIC3.26□□□□□ -1.89
USP48Q86UV5 Y_RNA.124-201ENST00000363339 93 ntBASIC3.26□□□□□ -1.89
USP48Q86UV5 Z98742.3-201ENST00000418637 326 ntBASIC3.26□□□□□ -1.89
USP48Q86UV5 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.26□□□□□ -1.89
USP48Q86UV5 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.26□□□□□ -1.89
USP48Q86UV5 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.26□□□□□ -1.89
USP48Q86UV5 AC100767.1-201ENST00000528178 123 ntBASIC3.26□□□□□ -1.89
USP48Q86UV5 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
USP48Q86UV5 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
USP48Q86UV5 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
USP48Q86UV5 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.25□□□□□ -1.89
USP48Q86UV5 RNA5SP289-201ENST00000362332 137 ntBASIC3.25□□□□□ -1.89
USP48Q86UV5 RNU6-1048P-201ENST00000364054 107 ntBASIC3.25□□□□□ -1.89
USP48Q86UV5 Y_RNA.287-201ENST00000364853 94 ntBASIC3.25□□□□□ -1.89
USP48Q86UV5 RNU6-407P-201ENST00000365280 104 ntBASIC3.25□□□□□ -1.89
USP48Q86UV5 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.25□□□□□ -1.89
USP48Q86UV5 HSPE1P13-201ENST00000451143 297 ntBASIC3.25□□□□□ -1.89
USP48Q86UV5 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.25□□□□□ -1.89
USP48Q86UV5 RNU6-856P-201ENST00000516959 98 ntBASIC3.25□□□□□ -1.89
USP48Q86UV5 AC007536.1-201ENST00000533382 349 ntBASIC3.25□□□□□ -1.89
USP48Q86UV5 NDUFA5P6-201ENST00000542110 379 ntBASIC3.25□□□□□ -1.89
USP48Q86UV5 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.25□□□□□ -1.89
USP48Q86UV5 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
USP48Q86UV5 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.24□□□□□ -1.89
USP48Q86UV5 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
USP48Q86UV5 Y_RNA.75-201ENST00000362927 97 ntBASIC3.24□□□□□ -1.89
USP48Q86UV5 snoU2_19.4-201ENST00000364329 80 ntBASIC3.24□□□□□ -1.89
USP48Q86UV5 RNU6-312P-201ENST00000364629 107 ntBASIC3.24□□□□□ -1.89
USP48Q86UV5 Y_RNA.572-201ENST00000384757 98 ntBASIC3.24□□□□□ -1.89
USP48Q86UV5 SNORA40.19-201ENST00000390846 128 ntBASIC3.24□□□□□ -1.89
USP48Q86UV5 RNU6-131P-201ENST00000391144 107 ntBASIC3.24□□□□□ -1.89
USP48Q86UV5 RNU6-381P-201ENST00000391259 108 ntBASIC3.24□□□□□ -1.89
USP48Q86UV5 AC016909.1-201ENST00000415916 166 ntBASIC3.24□□□□□ -1.89
USP48Q86UV5 RPL39P40-201ENST00000445481 146 ntBASIC3.24□□□□□ -1.89
USP48Q86UV5 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.24□□□□□ -1.89
USP48Q86UV5 RPS26P55-201ENST00000471178 356 ntBASIC3.24□□□□□ -1.89
USP48Q86UV5 SNORA9.3-201ENST00000516383 129 ntBASIC3.24□□□□□ -1.89
USP48Q86UV5 RPPH1-2P-201ENST00000516688 293 ntBASIC3.24□□□□□ -1.89
USP48Q86UV5 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC3.24□□□□□ -1.89
USP48Q86UV5 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP48Q86UV5 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP48Q86UV5 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.24□□□□□ -1.89
USP48Q86UV5 AC134026.1-201ENST00000623249 2239 ntBASIC3.23□□□□□ -1.89
USP48Q86UV5 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms