Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AL929325.1-201ENST00000603096 117 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 AC013412.1-201ENST00000610687 192 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 AP003122.5-201ENST00000527668 3766 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 AC103988.1-201ENST00000566382 2177 ntBASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CHMP3Q9Y3E7 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 U8.1-201ENST00000362843 134 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-978P-201ENST00000364371 103 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 DYNLT3P1-201ENST00000378574 347 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 RNY4P18-201ENST00000391107 89 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 SNORA79-201ENST00000408376 140 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 AC006483.1-201ENST00000487308 313 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 PDCD5P2-201ENST00000507570 312 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 RNA5SP112-201ENST00000515937 99 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 RNA5SP217-201ENST00000515959 91 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 RNU1-143P-201ENST00000516296 146 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-197P-201ENST00000516680 100 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-965P-201ENST00000516721 96 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 AC025647.1-201ENST00000517879 253 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 U1.23-201ENST00000610293 146 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 RNU1-68P-201ENST00000615382 146 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 U1.39-201ENST00000621562 146 ntBASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CHMP3Q9Y3E7 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-674P-201ENST00000363831 107 ntBASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 SNORD31B-201ENST00000364977 69 ntBASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-117P-201ENST00000365415 107 ntBASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 RNU6-476P-201ENST00000384726 107 ntBASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 Y_RNA.584-201ENST00000391090 114 ntBASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 RNA5SP354-201ENST00000391247 136 ntBASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 RPL32P35-201ENST00000415214 394 ntBASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 AC090515.1-201ENST00000465295 476 ntBASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 AC090049.2-201ENST00000550377 109 ntBASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CHMP3Q9Y3E7 AC138915.1-201ENST00000565427 1685 ntBASIC3.78□□□□□ -1.81
CHMP3Q9Y3E7 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.77□□□□□ -1.81
CHMP3Q9Y3E7 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CHMP3Q9Y3E7 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
CHMP3Q9Y3E7 MIR148B-201ENST00000362252 99 ntBASIC3.77□□□□□ -1.81
CHMP3Q9Y3E7 SNORA25.7-201ENST00000364375 127 ntBASIC3.77□□□□□ -1.81
CHMP3Q9Y3E7 Y_RNA.432-201ENST00000384087 111 ntBASIC3.77□□□□□ -1.81
CHMP3Q9Y3E7 EEF1A1P41-201ENST00000414667 207 ntBASIC3.77□□□□□ -1.81
CHMP3Q9Y3E7 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.77□□□□□ -1.81
CHMP3Q9Y3E7 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.77□□□□□ -1.81
CHMP3Q9Y3E7 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.77□□□□□ -1.81
CHMP3Q9Y3E7 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.77□□□□□ -1.81
CHMP3Q9Y3E7 AC073476.4-201ENST00000628409 72 ntBASIC3.77□□□□□ -1.81
CHMP3Q9Y3E7 AC091564.4-201ENST00000533934 2194 ntBASIC3.77□□□□□ -1.81
CHMP3Q9Y3E7 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 RNU4-13P-201ENST00000364019 141 ntBASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 RNA5SP496-201ENST00000391240 109 ntBASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 RNU6-772P-201ENST00000516042 105 ntBASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 RN7SKP179-201ENST00000516126 217 ntBASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 Y_RNA.712-201ENST00000517011 92 ntBASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 SCARNA15.3-201ENST00000626315 122 ntBASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 SCARNA4.1-201ENST00000628597 123 ntBASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 MIR1248-201ENST00000629190 106 ntBASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 AC110079.1-202ENST00000635213 138 ntBASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CHMP3Q9Y3E7 RNU6-486P-201ENST00000363116 107 ntBASIC3.75□□□□□ -1.81
CHMP3Q9Y3E7 RNU6-1328P-201ENST00000410938 106 ntBASIC3.75□□□□□ -1.81
CHMP3Q9Y3E7 Z82209.1-201ENST00000422141 2135 ntBASIC3.75□□□□□ -1.81
CHMP3Q9Y3E7 AC245047.4-201ENST00000433189 144 ntBASIC3.75□□□□□ -1.81
CHMP3Q9Y3E7 AC016925.1-201ENST00000458303 298 ntBASIC3.75□□□□□ -1.81
CHMP3Q9Y3E7 RPS27P22-201ENST00000478056 241 ntBASIC3.75□□□□□ -1.81
CHMP3Q9Y3E7 SCGB1D5P-201ENST00000515134 247 ntBASIC3.75□□□□□ -1.81
CHMP3Q9Y3E7 MTND5P34-201ENST00000568888 325 ntBASIC3.75□□□□□ -1.81
CHMP3Q9Y3E7 UCA1.1-201ENST00000620952 75 ntBASIC3.75□□□□□ -1.81
CHMP3Q9Y3E7 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
CHMP3Q9Y3E7 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.75□□□□□ -1.81
CHMP3Q9Y3E7 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CHMP3Q9Y3E7 AC093010.3-201ENST00000570269 15214 ntBASIC3.74□□□□□ -1.81
CHMP3Q9Y3E7 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CHMP3Q9Y3E7 RNA5SP383-201ENST00000362934 120 ntBASIC3.74□□□□□ -1.81
CHMP3Q9Y3E7 Y_RNA.91-201ENST00000363042 107 ntBASIC3.74□□□□□ -1.81
CHMP3Q9Y3E7 RNU6-805P-201ENST00000365643 106 ntBASIC3.74□□□□□ -1.81
CHMP3Q9Y3E7 CD24P4-201ENST00000382840 243 ntBASIC3.74□□□□□ -1.81
CHMP3Q9Y3E7 RNU6-1144P-201ENST00000384247 104 ntBASIC3.74□□□□□ -1.81
CHMP3Q9Y3E7 SNORA40.5-201ENST00000391061 128 ntBASIC3.74□□□□□ -1.81
CHMP3Q9Y3E7 RN7SL20P-201ENST00000488827 297 ntBASIC3.74□□□□□ -1.81
CHMP3Q9Y3E7 RNU6-948P-201ENST00000516374 107 ntBASIC3.74□□□□□ -1.81
CHMP3Q9Y3E7 RNU6-586P-201ENST00000517265 104 ntBASIC3.74□□□□□ -1.81
CHMP3Q9Y3E7 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.74□□□□□ -1.81
CHMP3Q9Y3E7 MIR3117-201ENST00000584034 78 ntBASIC3.74□□□□□ -1.81
CHMP3Q9Y3E7 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 AC073325.2-201ENST00000339545 159 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 RNU6-508P-201ENST00000363231 103 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 SNORA80A-201ENST00000363922 136 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 RNU6-1083P-201ENST00000384022 107 ntBASIC3.73□□□□□ -1.81
CHMP3Q9Y3E7 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms