Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 RNU6-635P-201ENST00000516651 102 ntBASIC2.55□□□□□ -2
CHMP4CQ96CF2 AL137100.2-201ENST00000555786 315 ntBASIC2.55□□□□□ -2
CHMP4CQ96CF2 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC2.55□□□□□ -2
CHMP4CQ96CF2 SNRPGP19-201ENST00000603826 189 ntBASIC2.55□□□□□ -2
CHMP4CQ96CF2 AC006435.5-201ENST00000624486 112 ntBASIC2.55□□□□□ -2
CHMP4CQ96CF2 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
CHMP4CQ96CF2 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
CHMP4CQ96CF2 RNU6-862P-201ENST00000362804 105 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 RNU6-271P-201ENST00000363858 105 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 Y_RNA.243-201ENST00000364481 109 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 RNU6-417P-201ENST00000384712 107 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 RNU6-713P-201ENST00000384761 107 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 RPL21P1-201ENST00000399532 476 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 RNU4-30P-201ENST00000410245 143 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 AL121890.1-201ENST00000435457 205 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.54□□□□□ -2
CHMP4CQ96CF2 snoU13.26-201ENST00000459452 105 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 RPS27P22-201ENST00000478056 241 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 SEPT14P8-201ENST00000508026 178 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.54□□□□□ -2
CHMP4CQ96CF2 SNORD113-5-201ENST00000607261 78 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 SDR42E1P4-201ENST00000620894 481 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 MIR338-201ENST00000636369 67 ntBASIC2.54□□□□□ -2
CHMP4CQ96CF2 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.54□□□□□ -2
CHMP4CQ96CF2 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.53□□□□□ -2
CHMP4CQ96CF2 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
CHMP4CQ96CF2 SNORD113-8-201ENST00000363497 74 ntBASIC2.53□□□□□ -2
CHMP4CQ96CF2 RNU1-96P-201ENST00000364163 162 ntBASIC2.53□□□□□ -2
CHMP4CQ96CF2 SNORA20B-201ENST00000384220 132 ntBASIC2.53□□□□□ -2
CHMP4CQ96CF2 Y_RNA.602-201ENST00000410535 92 ntBASIC2.53□□□□□ -2
CHMP4CQ96CF2 AL135786.1-201ENST00000415892 214 ntBASIC2.53□□□□□ -2
CHMP4CQ96CF2 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.53□□□□□ -2
CHMP4CQ96CF2 AL356320.1-201ENST00000429616 163 ntBASIC2.53□□□□□ -2
CHMP4CQ96CF2 AL731563.1-201ENST00000442202 214 ntBASIC2.53□□□□□ -2
CHMP4CQ96CF2 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.53□□□□□ -2
CHMP4CQ96CF2 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.53□□□□□ -2
CHMP4CQ96CF2 AC025033.1-201ENST00000463883 194 ntBASIC2.53□□□□□ -2
CHMP4CQ96CF2 SNORA70.12-201ENST00000516084 153 ntBASIC2.53□□□□□ -2
CHMP4CQ96CF2 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.53□□□□□ -2
CHMP4CQ96CF2 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.53□□□□□ -2
CHMP4CQ96CF2 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.53□□□□□ -2
CHMP4CQ96CF2 Y_RNA.783-201ENST00000613546 102 ntBASIC2.53□□□□□ -2
CHMP4CQ96CF2 U1.36-201ENST00000620684 176 ntBASIC2.53□□□□□ -2
CHMP4CQ96CF2 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
CHMP4CQ96CF2 SNORD115-30-201ENST00000364117 82 ntBASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 RNU6-407P-201ENST00000365280 104 ntBASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 MIR515-2-201ENST00000384883 83 ntBASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 MIR515-1-201ENST00000384884 83 ntBASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 SNORD115-46-201ENST00000390982 71 ntBASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 AL355796.1-201ENST00000406706 323 ntBASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 U3.40-201ENST00000408706 208 ntBASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 CST2P1-201ENST00000425770 87 ntBASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 MTND2P29-201ENST00000438595 412 ntBASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 LINC01399-202ENST00000458450 244 ntBASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 AL117187.1-201ENST00000555482 181 ntBASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 AC008269.2-201ENST00000561915 1105 ntBASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 PRR13P7-201ENST00000605538 430 ntBASIC2.52□□□□□ -2.01
CHMP4CQ96CF2 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
CHMP4CQ96CF2 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.51□□□□□ -2.01
CHMP4CQ96CF2 CENPCP1-201ENST00000533085 2578 ntBASIC2.51□□□□□ -2.01
CHMP4CQ96CF2 Y_RNA.287-201ENST00000364853 94 ntBASIC2.51□□□□□ -2.01
CHMP4CQ96CF2 RNA5SP323-201ENST00000391094 133 ntBASIC2.51□□□□□ -2.01
CHMP4CQ96CF2 RNU6-1109P-201ENST00000391187 107 ntBASIC2.51□□□□□ -2.01
CHMP4CQ96CF2 MIR873-201ENST00000401120 77 ntBASIC2.51□□□□□ -2.01
CHMP4CQ96CF2 AL031003.1-201ENST00000404229 172 ntBASIC2.51□□□□□ -2.01
CHMP4CQ96CF2 AC025465.3-201ENST00000510570 311 ntBASIC2.51□□□□□ -2.01
CHMP4CQ96CF2 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC2.51□□□□□ -2.01
CHMP4CQ96CF2 AC104984.5-201ENST00000586878 94 ntBASIC2.51□□□□□ -2.01
CHMP4CQ96CF2 AC069114.2-201ENST00000604699 304 ntBASIC2.51□□□□□ -2.01
CHMP4CQ96CF2 AC005828.6-201ENST00000606610 232 ntBASIC2.51□□□□□ -2.01
CHMP4CQ96CF2 SNORA27.1-201ENST00000362604 124 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 Y_RNA.105-201ENST00000363182 111 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 RNU6-238P-201ENST00000363313 106 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 Y_RNA.176-201ENST00000363815 109 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 RNA5SP338-201ENST00000410495 85 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 RNA5SP501-201ENST00000410990 112 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 RNU6-1199P-201ENST00000411249 104 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 POLR2KP2-201ENST00000438155 177 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 DYNLT3P2-201ENST00000442517 295 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 MRPS10P1-201ENST00000448483 130 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 RPL23AP3-201ENST00000453844 468 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 RNA5SP233-201ENST00000459153 113 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 RPS27P21-201ENST00000486977 252 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 AP003733.2-201ENST00000529409 171 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 AC023157.2-201ENST00000540596 141 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 MIR5094-201ENST00000578766 85 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 MIR4438-201ENST00000585271 93 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 AC022513.1-201ENST00000624512 117 ntBASIC2.5□□□□□ -2.01
CHMP4CQ96CF2 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 RNU4-90P-201ENST00000362773 141 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 Y_RNA.64-201ENST00000362845 102 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 RNU6-1309P-201ENST00000363305 108 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 Y_RNA.149-201ENST00000363558 117 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 RNU6-806P-201ENST00000365147 105 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms