Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RNU6-1205P-201ENST00000363625 106 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 SNORA51.4-201ENST00000364993 124 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 RNU6-969P-201ENST00000383900 105 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 MIR616-201ENST00000385293 97 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 MT-TT-201ENST00000387460 66 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 MIR1185-2-201ENST00000408687 86 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 AC097463.2-201ENST00000421074 142 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 AC244505.4-201ENST00000434905 287 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 AC008267.6-201ENST00000441664 139 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 SSXP5-201ENST00000443473 287 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 AL121914.1-201ENST00000450188 156 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 AC079598.5-201ENST00000547460 117 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
COL4A3Q01955 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
COL4A3Q01955 AC068700.1-201ENST00000565862 3754 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.63□□□□□ -1.99
COL4A3Q01955 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.63□□□□□ -1.99
COL4A3Q01955 RNU6-199P-201ENST00000362954 107 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 RNU4-11P-201ENST00000365287 132 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.63□□□□□ -1.99
COL4A3Q01955 Z98742.2-201ENST00000431564 187 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 AC011753.1-201ENST00000451001 220 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 AL137159.1-201ENST00000452808 512 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 RNU6-1007P-201ENST00000516586 107 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 RNA5SP309-201ENST00000516670 106 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 MIR4724-201ENST00000579485 89 ntBASIC2.63□□□□□ -1.99
COL4A3Q01955 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.63□□□□□ -1.99
COL4A3Q01955 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.63□□□□□ -1.99
COL4A3Q01955 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL4A3Q01955 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL4A3Q01955 AC010680.1-201ENST00000590024 3590 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 SNORD114-7-201ENST00000362520 77 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 MIR586-201ENST00000385035 97 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 MIR526A2-201ENST00000390198 65 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 RNU6-1228P-201ENST00000391014 107 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 MTND4LP9-201ENST00000427694 174 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 HSPE1P21-201ENST00000438283 308 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 AC074290.1-201ENST00000448883 135 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 RN7SL297P-201ENST00000483161 293 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 SNORA25.12-201ENST00000516202 82 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 RNU5F-4P-201ENST00000516581 114 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 MIR3605-201ENST00000583214 100 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 AL359881.1-201ENST00000602916 267 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 AC099778.2-201ENST00000610904 211 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 MIR6733-201ENST00000635723 61 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 AL133412.1-201ENST00000380194 2992 ntBASIC2.62□□□□□ -1.99
COL4A3Q01955 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
COL4A3Q01955 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
COL4A3Q01955 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
COL4A3Q01955 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
COL4A3Q01955 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.61□□□□□ -1.99
COL4A3Q01955 Y_RNA.71-201ENST00000362892 104 ntBASIC2.61□□□□□ -1.99
COL4A3Q01955 U8.7-201ENST00000364940 136 ntBASIC2.61□□□□□ -1.99
COL4A3Q01955 Y_RNA.361-201ENST00000365515 120 ntBASIC2.61□□□□□ -1.99
COL4A3Q01955 RNA5SP252-201ENST00000391131 119 ntBASIC2.61□□□□□ -1.99
COL4A3Q01955 AL135786.1-201ENST00000415892 214 ntBASIC2.61□□□□□ -1.99
COL4A3Q01955 AC245047.8-201ENST00000456455 284 ntBASIC2.61□□□□□ -1.99
COL4A3Q01955 AL031183.1-201ENST00000457667 207 ntBASIC2.61□□□□□ -1.99
COL4A3Q01955 RNU6-1211P-201ENST00000459179 105 ntBASIC2.61□□□□□ -1.99
COL4A3Q01955 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.61□□□□□ -1.99
COL4A3Q01955 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.61□□□□□ -1.99
COL4A3Q01955 RNU6-1098P-201ENST00000516772 96 ntBASIC2.61□□□□□ -1.99
COL4A3Q01955 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.61□□□□□ -1.99
COL4A3Q01955 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.61□□□□□ -1.99
COL4A3Q01955 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC2.61□□□□□ -1.99
COL4A3Q01955 AL391903.3-201ENST00000612158 163 ntBASIC2.61□□□□□ -1.99
COL4A3Q01955 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.61□□□□□ -1.99
COL4A3Q01955 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
COL4A3Q01955 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.61□□□□□ -1.99
COL4A3Q01955 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
COL4A3Q01955 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.61□□□□□ -1.99
COL4A3Q01955 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.61□□□□□ -1.99
COL4A3Q01955 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
COL4A3Q01955 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.61□□□□□ -1.99
COL4A3Q01955 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
COL4A3Q01955 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
COL4A3Q01955 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A3Q01955 RNA5SP205-201ENST00000364653 136 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 RNU6-728P-201ENST00000365375 104 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 SNORD20-201ENST00000384550 80 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 RNU4-53P-201ENST00000410828 140 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 RPL23AP58-201ENST00000440453 469 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 RN7SL636P-201ENST00000497504 294 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 RNU6-1053P-201ENST00000515930 101 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 AC112693.2-201ENST00000556538 232 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 MIR6844-201ENST00000637122 62 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A3Q01955 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.6□□□□□ -1.99
COL4A3Q01955 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A3Q01955 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.6□□□□□ -1.99
COL4A3Q01955 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A3Q01955 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
COL4A3Q01955 SNORD114-1-201ENST00000362705 72 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 MIR539-201ENST00000365690 78 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 Y_RNA.542-201ENST00000384641 111 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 AL606845.1-201ENST00000404881 255 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 AC006461.1-201ENST00000412637 326 ntBASIC2.6□□□□□ -1.99
COL4A3Q01955 HSPE1P13-201ENST00000451143 297 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms