Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 U6.115-201ENST00000636045 103 ntBASIC2.09□□□□□ -2.07
PTPN9P43378 SNORD115-3-201ENST00000363100 82 ntBASIC2.08□□□□□ -2.08
PTPN9P43378 Y_RNA.101-201ENST00000363154 102 ntBASIC2.08□□□□□ -2.08
PTPN9P43378 RNA5SP138-201ENST00000365098 114 ntBASIC2.08□□□□□ -2.08
PTPN9P43378 MIR515-2-201ENST00000384883 83 ntBASIC2.08□□□□□ -2.08
PTPN9P43378 MIR515-1-201ENST00000384884 83 ntBASIC2.08□□□□□ -2.08
PTPN9P43378 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.08□□□□□ -2.08
PTPN9P43378 SNORD65B-201ENST00000459126 73 ntBASIC2.08□□□□□ -2.08
PTPN9P43378 SEPT14P8-201ENST00000508026 178 ntBASIC2.08□□□□□ -2.08
PTPN9P43378 RNU6-1046P-201ENST00000516538 107 ntBASIC2.08□□□□□ -2.08
PTPN9P43378 SNORD113-5-201ENST00000607261 78 ntBASIC2.08□□□□□ -2.08
PTPN9P43378 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.08□□□□□ -2.08
PTPN9P43378 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
PTPN9P43378 snoU2-30.2-201ENST00000362805 70 ntBASIC2.07□□□□□ -2.08
PTPN9P43378 RNU6-271P-201ENST00000363858 105 ntBASIC2.07□□□□□ -2.08
PTPN9P43378 SNORD115-30-201ENST00000364117 82 ntBASIC2.07□□□□□ -2.08
PTPN9P43378 Y_RNA.446-201ENST00000384178 104 ntBASIC2.07□□□□□ -2.08
PTPN9P43378 Y_RNA.459-201ENST00000384251 102 ntBASIC2.07□□□□□ -2.08
PTPN9P43378 RNU6-937P-201ENST00000384325 106 ntBASIC2.07□□□□□ -2.08
PTPN9P43378 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
PTPN9P43378 RNU6-1199P-201ENST00000411249 104 ntBASIC2.07□□□□□ -2.08
PTPN9P43378 AL356379.1-201ENST00000414105 126 ntBASIC2.07□□□□□ -2.08
PTPN9P43378 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
PTPN9P43378 AC055731.1-201ENST00000474387 401 ntBASIC2.07□□□□□ -2.08
PTPN9P43378 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.07□□□□□ -2.08
PTPN9P43378 AC005034.5-201ENST00000604219 466 ntBASIC2.07□□□□□ -2.08
PTPN9P43378 AC006001.4-201ENST00000622243 395 ntBASIC2.07□□□□□ -2.08
PTPN9P43378 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.07□□□□□ -2.08
PTPN9P43378 MIR338-201ENST00000636369 67 ntBASIC2.07□□□□□ -2.08
PTPN9P43378 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
PTPN9P43378 Y_RNA.581-201ENST00000391017 97 ntBASIC2.06□□□□□ -2.08
PTPN9P43378 RNU11-3P-201ENST00000391111 133 ntBASIC2.06□□□□□ -2.08
PTPN9P43378 AL117342.1-201ENST00000404861 406 ntBASIC2.06□□□□□ -2.08
PTPN9P43378 OOSP1P1-201ENST00000423265 274 ntBASIC2.06□□□□□ -2.08
PTPN9P43378 CST2P1-201ENST00000425770 87 ntBASIC2.06□□□□□ -2.08
PTPN9P43378 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.06□□□□□ -2.08
PTPN9P43378 LINC01399-202ENST00000458450 244 ntBASIC2.06□□□□□ -2.08
PTPN9P43378 RPS29P21-201ENST00000496272 170 ntBASIC2.06□□□□□ -2.08
PTPN9P43378 RNU1-41P-201ENST00000516161 162 ntBASIC2.06□□□□□ -2.08
PTPN9P43378 RNU1-48P-201ENST00000516400 162 ntBASIC2.06□□□□□ -2.08
PTPN9P43378 AC127459.3-201ENST00000624328 466 ntBASIC2.06□□□□□ -2.08
PTPN9P43378 AC022513.1-201ENST00000624512 117 ntBASIC2.06□□□□□ -2.08
PTPN9P43378 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.06□□□□□ -2.08
PTPN9P43378 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
PTPN9P43378 Y_RNA.19-201ENST00000362462 99 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 Y_RNA.133-201ENST00000363428 110 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 Y_RNA.222-201ENST00000364264 102 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 RNU6-21P-201ENST00000384710 107 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 RNU6-1105P-201ENST00000384774 107 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 MIR1253-201ENST00000408273 105 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 RNU6-121P-201ENST00000410525 99 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 RNU2-40P-201ENST00000410833 196 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 RNA5SP450-201ENST00000411206 102 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC2.05□□□□□ -2.08
PTPN9P43378 HMGN2P3-201ENST00000433603 273 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 HMGN2P5-201ENST00000436882 273 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 HMGN2P34-201ENST00000437647 269 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.05□□□□□ -2.08
PTPN9P43378 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.05□□□□□ -2.08
PTPN9P43378 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2.05□□□□□ -2.08
PTPN9P43378 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
PTPN9P43378 SNORA70.12-201ENST00000516084 153 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 RNU6-155P-201ENST00000516347 100 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 RNU7-110P-201ENST00000516891 62 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC2.05□□□□□ -2.08
PTPN9P43378 AL137100.2-201ENST00000555786 315 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 AC007229.1-201ENST00000590455 412 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 uc_338.20-201ENST00000621563 178 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.05□□□□□ -2.08
PTPN9P43378 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
PTPN9P43378 AC008555.8-201ENST00000623602 2168 ntBASIC2.05□□□□□ -2.08
PTPN9P43378 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
PTPN9P43378 SNORA27.1-201ENST00000362604 124 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 RNU4-90P-201ENST00000362773 141 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 Y_RNA.176-201ENST00000363815 109 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 Y_RNA.331-201ENST00000365267 102 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 SNORA20B-201ENST00000384220 132 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 Y_RNA.574-201ENST00000384766 95 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 MIR873-201ENST00000401120 77 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 AL355796.1-201ENST00000406706 323 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 RNU2-20P-201ENST00000410425 191 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 AC010154.1-201ENST00000425857 269 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 RNA5SP233-201ENST00000459153 113 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 RNU6-496P-201ENST00000516145 99 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 RNY3P15-201ENST00000516297 97 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 AC024995.1-201ENST00000523014 93 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.04□□□□□ -2.08
PTPN9P43378 AP003733.2-201ENST00000529409 171 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.04□□□□□ -2.08
PTPN9P43378 U1.36-201ENST00000620684 176 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 SDR42E1P4-201ENST00000620894 481 ntBASIC2.04□□□□□ -2.08
PTPN9P43378 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
PTPN9P43378 Y_RNA.105-201ENST00000363182 111 ntBASIC2.03□□□□□ -2.08
PTPN9P43378 SNORD113-8-201ENST00000363497 74 ntBASIC2.03□□□□□ -2.08
PTPN9P43378 Y_RNA.149-201ENST00000363558 117 ntBASIC2.03□□□□□ -2.08
PTPN9P43378 Y_RNA.287-201ENST00000364853 94 ntBASIC2.03□□□□□ -2.08
PTPN9P43378 SNORA48.1-201ENST00000390879 135 ntBASIC2.03□□□□□ -2.08
PTPN9P43378 snosnR66.1-201ENST00000391095 99 ntBASIC2.03□□□□□ -2.08
PTPN9P43378 MTCO2P24-201ENST00000515611 426 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 114.5 ms