Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC068339.1-201ENST00000526965 141 ntBASIC3.5□□□□□ -1.85
MSX1P28360 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.5□□□□□ -1.85
MSX1P28360 AC087499.8-201ENST00000578406 226 ntBASIC3.5□□□□□ -1.85
MSX1P28360 MIR8058-201ENST00000615737 89 ntBASIC3.5□□□□□ -1.85
MSX1P28360 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.49□□□□□ -1.85
MSX1P28360 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSX1P28360 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
MSX1P28360 RNU6-546P-201ENST00000383991 107 ntBASIC3.49□□□□□ -1.85
MSX1P28360 SNORA9-201ENST00000384215 133 ntBASIC3.49□□□□□ -1.85
MSX1P28360 U8.11-201ENST00000384699 133 ntBASIC3.49□□□□□ -1.85
MSX1P28360 RNU6-1186P-201ENST00000410429 97 ntBASIC3.49□□□□□ -1.85
MSX1P28360 AC123900.1-201ENST00000420390 96 ntBASIC3.49□□□□□ -1.85
MSX1P28360 RPS15AP28-201ENST00000435088 386 ntBASIC3.49□□□□□ -1.85
MSX1P28360 HMGN2P34-201ENST00000437647 269 ntBASIC3.49□□□□□ -1.85
MSX1P28360 AC009969.1-201ENST00000438726 172 ntBASIC3.49□□□□□ -1.85
MSX1P28360 U8.18-201ENST00000459285 133 ntBASIC3.49□□□□□ -1.85
MSX1P28360 RNU7-99P-201ENST00000516271 62 ntBASIC3.49□□□□□ -1.85
MSX1P28360 RNU6-1146P-201ENST00000516282 102 ntBASIC3.49□□□□□ -1.85
MSX1P28360 RNU6-638P-201ENST00000516582 104 ntBASIC3.49□□□□□ -1.85
MSX1P28360 RNY4P20-201ENST00000516678 93 ntBASIC3.49□□□□□ -1.85
MSX1P28360 Y_RNA.714-201ENST00000517065 90 ntBASIC3.49□□□□□ -1.85
MSX1P28360 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.49□□□□□ -1.85
MSX1P28360 AL137849.1-201ENST00000604767 169 ntBASIC3.49□□□□□ -1.85
MSX1P28360 MIR2052-201ENST00000636055 55 ntBASIC3.49□□□□□ -1.85
MSX1P28360 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
MSX1P28360 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
MSX1P28360 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.48□□□□□ -1.85
MSX1P28360 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
MSX1P28360 AC080128.1-201ENST00000474389 1917 ntBASIC3.48□□□□□ -1.85
MSX1P28360 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.48□□□□□ -1.85
MSX1P28360 AC091564.4-201ENST00000533934 2194 ntBASIC3.48□□□□□ -1.85
MSX1P28360 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
MSX1P28360 AC091152.2-201ENST00000591628 2569 ntBASIC3.48□□□□□ -1.85
MSX1P28360 AC018630.2-201ENST00000534866 2403 ntBASIC3.48□□□□□ -1.85
MSX1P28360 RNU6-690P-201ENST00000365242 106 ntBASIC3.48□□□□□ -1.85
MSX1P28360 RNY1P7-201ENST00000384743 110 ntBASIC3.48□□□□□ -1.85
MSX1P28360 AC060773.1-201ENST00000421698 310 ntBASIC3.48□□□□□ -1.85
MSX1P28360 MTATP8P2-201ENST00000435212 202 ntBASIC3.48□□□□□ -1.85
MSX1P28360 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.48□□□□□ -1.85
MSX1P28360 AC093259.1-201ENST00000509755 300 ntBASIC3.48□□□□□ -1.85
MSX1P28360 SCGB1D5P-201ENST00000515134 247 ntBASIC3.48□□□□□ -1.85
MSX1P28360 RNU6-1291P-201ENST00000516591 104 ntBASIC3.48□□□□□ -1.85
MSX1P28360 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.48□□□□□ -1.85
MSX1P28360 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
MSX1P28360 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.48□□□□□ -1.85
MSX1P28360 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
MSX1P28360 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
MSX1P28360 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
MSX1P28360 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
MSX1P28360 AC093908.1-201ENST00000623125 8092 ntBASIC3.48□□□□□ -1.85
MSX1P28360 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
MSX1P28360 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
MSX1P28360 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
MSX1P28360 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
MSX1P28360 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
MSX1P28360 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.47□□□□□ -1.85
MSX1P28360 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
MSX1P28360 MIR126-201ENST00000362291 85 ntBASIC3.47□□□□□ -1.85
MSX1P28360 MIR491-201ENST00000384877 84 ntBASIC3.47□□□□□ -1.85
MSX1P28360 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
MSX1P28360 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.47□□□□□ -1.85
MSX1P28360 PHBP14-201ENST00000512887 367 ntBASIC3.47□□□□□ -1.85
MSX1P28360 RNU6-830P-201ENST00000516353 107 ntBASIC3.47□□□□□ -1.85
MSX1P28360 SCARNA11.3-201ENST00000517276 130 ntBASIC3.47□□□□□ -1.85
MSX1P28360 AC004486.1-201ENST00000546846 233 ntBASIC3.47□□□□□ -1.85
MSX1P28360 AC007229.1-201ENST00000590455 412 ntBASIC3.47□□□□□ -1.85
MSX1P28360 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
MSX1P28360 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
MSX1P28360 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.46□□□□□ -1.85
MSX1P28360 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.46□□□□□ -1.86
MSX1P28360 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
MSX1P28360 ZNF271P-202ENST00000465539 1970 ntBASIC3.46□□□□□ -1.86
MSX1P28360 Y_RNA.332-201ENST00000365271 113 ntBASIC3.46□□□□□ -1.86
MSX1P28360 SNORA2.2-201ENST00000365473 135 ntBASIC3.46□□□□□ -1.86
MSX1P28360 Y_RNA.410-201ENST00000383992 113 ntBASIC3.46□□□□□ -1.86
MSX1P28360 MIR34B-201ENST00000385076 84 ntBASIC3.46□□□□□ -1.86
MSX1P28360 SNORA19.1-201ENST00000410656 129 ntBASIC3.46□□□□□ -1.86
MSX1P28360 RPS12P18-201ENST00000442381 270 ntBASIC3.46□□□□□ -1.86
MSX1P28360 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.46□□□□□ -1.86
MSX1P28360 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC3.46□□□□□ -1.86
MSX1P28360 RN7SKP12-201ENST00000516275 143 ntBASIC3.46□□□□□ -1.86
MSX1P28360 SNORA74D-201ENST00000516404 141 ntBASIC3.46□□□□□ -1.86
MSX1P28360 RN7SKP209-201ENST00000516888 304 ntBASIC3.46□□□□□ -1.86
MSX1P28360 RNU6-341P-201ENST00000516973 96 ntBASIC3.46□□□□□ -1.86
MSX1P28360 SNORA70.24-201ENST00000517233 118 ntBASIC3.46□□□□□ -1.86
MSX1P28360 RNU7-128P-201ENST00000517247 62 ntBASIC3.46□□□□□ -1.86
MSX1P28360 snoMBII-202.2-201ENST00000517263 86 ntBASIC3.46□□□□□ -1.86
MSX1P28360 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.46□□□□□ -1.86
MSX1P28360 AL358944.1-201ENST00000528537 144 ntBASIC3.46□□□□□ -1.86
MSX1P28360 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.46□□□□□ -1.86
MSX1P28360 AC022217.4-201ENST00000604389 163 ntBASIC3.46□□□□□ -1.86
MSX1P28360 AC134878.1-201ENST00000619901 243 ntBASIC3.46□□□□□ -1.86
MSX1P28360 MIR1245B-201ENST00000636115 69 ntBASIC3.46□□□□□ -1.86
MSX1P28360 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
MSX1P28360 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.46□□□□□ -1.86
MSX1P28360 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
MSX1P28360 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
MSX1P28360 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
MSX1P28360 RNU6-349P-201ENST00000362402 107 ntBASIC3.45□□□□□ -1.86
MSX1P28360 RNU6-743P-201ENST00000364151 106 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms