Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.01□□□□□ -2.09
LMX1BO60663 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.01□□□□□ -2.09
LMX1BO60663 AL591806.2-201ENST00000433122 173 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 MTND5P15-201ENST00000434246 349 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.01□□□□□ -2.09
LMX1BO60663 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.01□□□□□ -2.09
LMX1BO60663 RNA5SP281-201ENST00000516504 135 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 RNU6-107P-201ENST00000516643 102 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 RNU1-104P-201ENST00000517280 175 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.01□□□□□ -2.09
LMX1BO60663 AC105245.1-201ENST00000581934 244 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.01□□□□□ -2.09
LMX1BO60663 AC103810.6-201ENST00000606708 136 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 AC004792.1-201ENST00000614523 137 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 FTX_2.1-201ENST00000618816 94 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 MIR6873-201ENST00000622788 63 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 MIR7157-201ENST00000635801 60 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 U6.115-201ENST00000636045 103 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.01□□□□□ -2.09
LMX1BO60663 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.01□□□□□ -2.09
LMX1BO60663 AC016717.2-201ENST00000609089 5141 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.01□□□□□ -2.09
LMX1BO60663 AC005336.3-201ENST00000623833 2679 ntBASIC2.01□□□□□ -2.09
LMX1BO60663 MIR411-201ENST00000362239 96 ntBASIC2□□□□□ -2.09
LMX1BO60663 RNU6-1305P-201ENST00000364353 104 ntBASIC2□□□□□ -2.09
LMX1BO60663 RNU6-234P-201ENST00000365229 104 ntBASIC2□□□□□ -2.09
LMX1BO60663 MIR144-201ENST00000384886 86 ntBASIC2□□□□□ -2.09
LMX1BO60663 MIR1294-201ENST00000408503 142 ntBASIC2□□□□□ -2.09
LMX1BO60663 MIR1185-2-201ENST00000408687 86 ntBASIC2□□□□□ -2.09
LMX1BO60663 TOMM22P2-201ENST00000430735 237 ntBASIC2□□□□□ -2.09
LMX1BO60663 AC018634.1-201ENST00000437554 401 ntBASIC2□□□□□ -2.09
LMX1BO60663 Y_RNA.637-201ENST00000459424 114 ntBASIC2□□□□□ -2.09
LMX1BO60663 AC080013.2-201ENST00000460866 323 ntBASIC2□□□□□ -2.09
LMX1BO60663 RNU6-586P-201ENST00000517265 104 ntBASIC2□□□□□ -2.09
LMX1BO60663 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2□□□□□ -2.09
LMX1BO60663 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2□□□□□ -2.09
LMX1BO60663 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2□□□□□ -2.09
LMX1BO60663 AL670379.2-201ENST00000604983 252 ntBASIC2□□□□□ -2.09
LMX1BO60663 AC025754.2-201ENST00000606491 432 ntBASIC2□□□□□ -2.09
LMX1BO60663 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2□□□□□ -2.09
LMX1BO60663 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2□□□□□ -2.09
LMX1BO60663 AC098479.1-201ENST00000609225 154 ntBASIC2□□□□□ -2.09
LMX1BO60663 snoU18.1-201ENST00000629629 71 ntBASIC2□□□□□ -2.09
LMX1BO60663 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
LMX1BO60663 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.99□□□□□ -2.09
LMX1BO60663 Z82209.1-201ENST00000422141 2135 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 Y_RNA.83-201ENST00000363005 113 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 RNU1-23P-201ENST00000363361 144 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 Y_RNA.199-201ENST00000364014 102 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 RNU6-801P-201ENST00000364087 105 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 RNU6-47P-201ENST00000383866 107 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 RNU6-220P-201ENST00000390919 107 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 RNU6-482P-201ENST00000391068 107 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 AL031003.1-201ENST00000404229 172 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 MIR1289-2-201ENST00000408360 111 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 MIR1283-1-201ENST00000408494 87 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 RNU2-61P-201ENST00000411069 191 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 HMGN2P3-201ENST00000433603 273 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 HMGN2P5-201ENST00000436882 273 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.99□□□□□ -2.09
LMX1BO60663 RNU7-14P-201ENST00000459331 62 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 COX6CP14-201ENST00000469580 174 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 SNORA31.11-201ENST00000516528 139 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 RNU5F-4P-201ENST00000516581 114 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.99□□□□□ -2.09
LMX1BO60663 PRELID2P1-201ENST00000552837 301 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 AC037487.3-201ENST00000606668 112 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 AC069294.1-201ENST00000608397 350 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 AL008718.3-201ENST00000610217 321 ntBASIC1.99□□□□□ -2.09
LMX1BO60663 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC1.99□□□□□ -2.09
LMX1BO60663 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.99□□□□□ -2.09
LMX1BO60663 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC1.98□□□□□ -2.09
LMX1BO60663 Y_RNA.29-201ENST00000362570 113 ntBASIC1.98□□□□□ -2.09
LMX1BO60663 RNU6-461P-201ENST00000364195 107 ntBASIC1.98□□□□□ -2.09
LMX1BO60663 SNORA67.1-201ENST00000364749 141 ntBASIC1.98□□□□□ -2.09
LMX1BO60663 RNU6-209P-201ENST00000384118 107 ntBASIC1.98□□□□□ -2.09
LMX1BO60663 PIGPP3-201ENST00000425307 415 ntBASIC1.98□□□□□ -2.09
LMX1BO60663 Y_RNA.644-201ENST00000459006 113 ntBASIC1.98□□□□□ -2.09
LMX1BO60663 AC107393.1-201ENST00000512403 346 ntBASIC1.98□□□□□ -2.09
LMX1BO60663 Y_RNA.674-201ENST00000516362 113 ntBASIC1.98□□□□□ -2.09
LMX1BO60663 RNU6-965P-201ENST00000516721 96 ntBASIC1.98□□□□□ -2.09
LMX1BO60663 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.98□□□□□ -2.09
LMX1BO60663 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.98□□□□□ -2.09
LMX1BO60663 MIR6766-201ENST00000622641 72 ntBASIC1.98□□□□□ -2.09
LMX1BO60663 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.98□□□□□ -2.09
LMX1BO60663 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.98□□□□□ -2.09
LMX1BO60663 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
LMX1BO60663 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.97□□□□□ -2.09
LMX1BO60663 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
LMX1BO60663 MIR340-201ENST00000362125 95 ntBASIC1.97□□□□□ -2.09
LMX1BO60663 RNU6-1272P-201ENST00000362776 107 ntBASIC1.97□□□□□ -2.09
LMX1BO60663 SNORD31B-201ENST00000364977 69 ntBASIC1.97□□□□□ -2.09
LMX1BO60663 RNU6-514P-201ENST00000384208 107 ntBASIC1.97□□□□□ -2.09
LMX1BO60663 RNU6-975P-201ENST00000384296 105 ntBASIC1.97□□□□□ -2.09
LMX1BO60663 Y_RNA.555-201ENST00000384673 110 ntBASIC1.97□□□□□ -2.09
LMX1BO60663 AL355796.1-201ENST00000406706 323 ntBASIC1.97□□□□□ -2.09
LMX1BO60663 Y_RNA.590-201ENST00000410140 107 ntBASIC1.97□□□□□ -2.09
LMX1BO60663 AC016925.1-201ENST00000458303 298 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms