Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.03□□□□□ -2.24
TRAV40A0A0B4J280 AC008555.8-201ENST00000623602 2168 ntBASIC1.03□□□□□ -2.25
TRAV40A0A0B4J280 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.03□□□□□ -2.25
TRAV40A0A0B4J280 RNU6-1019P-201ENST00000364424 107 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.259-201ENST00000364619 101 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 RNU6-1240P-201ENST00000365155 104 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 MIR320B2-201ENST00000408479 138 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.592-201ENST00000410274 109 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 RNU6-1186P-201ENST00000410429 97 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 AF228730.4-201ENST00000421457 183 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 RPS29P23-201ENST00000458635 123 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.653-201ENST00000459091 95 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.661-201ENST00000516003 99 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.673-201ENST00000516306 88 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 RNU2-34P-201ENST00000516534 121 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 RNU6-1198P-201ENST00000516904 67 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 AC069114.2-201ENST00000604699 304 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.804-201ENST00000615262 101 ntBASIC1.02□□□□□ -2.25
TRAV40A0A0B4J280 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.80-201ENST00000362996 102 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.124-201ENST00000363339 93 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.224-201ENST00000364308 111 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.387-201ENST00000383918 102 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.485-201ENST00000384395 102 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 RNU6-1297P-201ENST00000384415 104 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 MIR520A-201ENST00000384862 85 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 MIR758-201ENST00000390227 88 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 RPL21P1-201ENST00000399532 476 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 MIR1253-201ENST00000408273 105 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 CST2P1-201ENST00000425770 87 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 MTATP6P23-201ENST00000440153 476 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 UQCRBP2-201ENST00000447827 297 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 HSPE1P24-201ENST00000450782 238 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 ELOCP24-201ENST00000456370 334 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 AC114982.1-201ENST00000469402 321 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 SNORA40.9-201ENST00000515895 93 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 AC018448.1-201ENST00000552843 316 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 MIR5690-201ENST00000583739 73 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 MIR4795-201ENST00000584182 89 ntBASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.01□□□□□ -2.25
TRAV40A0A0B4J280 AC100821.1-201ENST00000523153 2479 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 MIR126-201ENST00000362291 85 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 RNU4-73P-201ENST00000363164 141 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.315-201ENST00000365117 102 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 RNU6-338P-201ENST00000383888 105 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.419-201ENST00000384041 102 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 SNORA20B-201ENST00000384220 132 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.463-201ENST00000384271 102 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 SNORD12B-201ENST00000410433 91 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 RNU2-7P-201ENST00000410794 178 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 AC114482.1-201ENST00000418010 247 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1□□□□□ -2.25
TRAV40A0A0B4J280 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1□□□□□ -2.25
TRAV40A0A0B4J280 MTND5P20-201ENST00000448677 143 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 PCNPP5-201ENST00000452246 481 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 SNORD19B-201ENST00000459623 84 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 RPL26P26-201ENST00000480251 434 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 AC099513.1-201ENST00000490423 301 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 AC010469.2-201ENST00000496412 480 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 FGF7P4-201ENST00000509595 295 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 RNU6-408P-201ENST00000515910 100 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.702-201ENST00000516843 96 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 RNA5SP102-201ENST00000516865 106 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 RAB11AP2-201ENST00000545905 639 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 AL160236.1-201ENST00000556317 195 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 AC008269.2-201ENST00000561915 1105 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1□□□□□ -2.25
TRAV40A0A0B4J280 AC005899.2-201ENST00000584353 90 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1□□□□□ -2.25
TRAV40A0A0B4J280 AL929325.1-201ENST00000603096 117 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 AC073413.2-201ENST00000604332 360 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 WWP1P1-201ENST00000466609 2769 ntBASIC1□□□□□ -2.25
TRAV40A0A0B4J280 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1□□□□□ -2.25
TRAV40A0A0B4J280 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.99□□□□□ -2.25
TRAV40A0A0B4J280 RNU6-271P-201ENST00000363858 105 ntBASIC0.99□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.263-201ENST00000364659 114 ntBASIC0.99□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.314-201ENST00000365114 102 ntBASIC0.99□□□□□ -2.25
TRAV40A0A0B4J280 Y_RNA.577-201ENST00000384794 101 ntBASIC0.99□□□□□ -2.25
TRAV40A0A0B4J280 AL161935.2-201ENST00000414627 60 ntBASIC0.99□□□□□ -2.25
TRAV40A0A0B4J280 EBAG9P1-201ENST00000418955 543 ntBASIC0.99□□□□□ -2.25
TRAV40A0A0B4J280 RAB28P5-201ENST00000427490 651 ntBASIC0.99□□□□□ -2.25
TRAV40A0A0B4J280 COX6CP14-201ENST00000469580 174 ntBASIC0.99□□□□□ -2.25
TRAV40A0A0B4J280 RN7SKP49-201ENST00000516675 260 ntBASIC0.99□□□□□ -2.25
TRAV40A0A0B4J280 RNU6-63P-201ENST00000516690 95 ntBASIC0.99□□□□□ -2.25
TRAV40A0A0B4J280 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 121.2 ms