Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MICF-203ENST00000432679 129 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 RPL21P129-201ENST00000491732 478 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 OR9P1P-201ENST00000496431 281 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 AC023632.4-201ENST00000517783 191 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 MIR3186-201ENST00000577404 85 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 AL365205.2-201ENST00000594586 68 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 AC107294.3-201ENST00000609211 526 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 JPX_2.1-201ENST00000614161 69 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 AL596211.1-201ENST00000569873 2277 ntBASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HIF3AQ9Y2N7 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 MAPK10-322ENST00000641485 4530 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 RNU6-766P-201ENST00000362478 107 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 RNU6-1240P-201ENST00000365155 104 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 SNORA51.5-201ENST00000384126 131 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 SNORD72-201ENST00000390994 80 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 SNORA57.3-201ENST00000411095 141 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 SNORA84-201ENST00000459229 133 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 RNU2-34P-201ENST00000516534 121 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 RNU6-365P-201ENST00000517113 106 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 MIR4438-201ENST00000585271 93 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 SNORA51-201ENST00000606420 132 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 AC009831.4-201ENST00000620744 325 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 PWAR6-201ENST00000552334 4618 ntBASIC3.27□□□□□ -1.89
HIF3AQ9Y2N7 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 Y_RNA.85-201ENST00000363014 111 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 RNU1-22P-201ENST00000363334 158 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 Y_RNA.163-201ENST00000363702 113 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 SNORA62.3-201ENST00000365110 153 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 Y_RNA.328-201ENST00000365208 113 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 Y_RNA.388-201ENST00000383919 113 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 RNU6-49P-201ENST00000384256 107 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 MIR554-201ENST00000384874 96 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 MIR23A-201ENST00000385245 73 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 RN7SKP202-201ENST00000410439 330 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 RNY4P29-201ENST00000410801 97 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 Y_RNA.621-201ENST00000411065 96 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 RPS12P18-201ENST00000442381 270 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 AC097462.1-201ENST00000514125 324 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 RNU6-965P-201ENST00000516721 96 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 RNU6-762P-201ENST00000517107 102 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 RNU7-172P-201ENST00000517125 64 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 RNU6-1270P-201ENST00000517128 108 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 AC034105.4-201ENST00000568304 277 ntBASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HIF3AQ9Y2N7 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 SNORA26.2-201ENST00000390922 122 ntBASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 RN7SKP156-201ENST00000410308 342 ntBASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 RNU2-32P-201ENST00000411193 191 ntBASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 RNA5SP236-201ENST00000516169 116 ntBASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 AP001318.4-201ENST00000616637 121 ntBASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 U6.73-201ENST00000619194 103 ntBASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 MIR7157-201ENST00000635801 60 ntBASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HIF3AQ9Y2N7 RNU6-1138P-201ENST00000365359 106 ntBASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 HMGN2P18-201ENST00000450680 270 ntBASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 RPS29P21-201ENST00000496272 170 ntBASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 RNU2-27P-201ENST00000516185 142 ntBASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 SCARNA3-201ENST00000517097 143 ntBASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 RNU1-45P-201ENST00000517191 141 ntBASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 IGHVIII-67-2-201ENST00000519849 88 ntBASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 MIR5685-201ENST00000579080 79 ntBASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 MIR4662B-201ENST00000579498 81 ntBASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 RNVU1-4-201ENST00000612985 164 ntBASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 AL035470.1-201ENST00000622571 220 ntBASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.24□□□□□ -1.89
HIF3AQ9Y2N7 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 AC093908.1-201ENST00000623125 8092 ntBASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 SNORA63.5-201ENST00000363548 123 ntBASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 Y_RNA.366-201ENST00000365540 102 ntBASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.23□□□□□ -1.89
HIF3AQ9Y2N7 MIR570-201ENST00000384917 97 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 189.8 ms