Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RPS27P22-201ENST00000478056 241 ntBASIC1.73□□□□□ -2.13
VPS28Q9UK41 RNU7-128P-201ENST00000517247 62 ntBASIC1.73□□□□□ -2.13
VPS28Q9UK41 AC018448.1-201ENST00000552843 316 ntBASIC1.73□□□□□ -2.13
VPS28Q9UK41 RBM11P1-201ENST00000604951 799 ntBASIC1.73□□□□□ -2.13
VPS28Q9UK41 AC095038.3-201ENST00000634439 195 ntBASIC1.73□□□□□ -2.13
VPS28Q9UK41 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
VPS28Q9UK41 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
VPS28Q9UK41 RNU4-42P-201ENST00000364738 142 ntBASIC1.72□□□□□ -2.13
VPS28Q9UK41 MTCYBP4-201ENST00000401524 249 ntBASIC1.72□□□□□ -2.13
VPS28Q9UK41 AC005002.2-201ENST00000438228 269 ntBASIC1.72□□□□□ -2.13
VPS28Q9UK41 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.72□□□□□ -2.13
VPS28Q9UK41 RPS27P1-201ENST00000450552 247 ntBASIC1.72□□□□□ -2.13
VPS28Q9UK41 SNORD13-201ENST00000459299 104 ntBASIC1.72□□□□□ -2.13
VPS28Q9UK41 RNU7-94P-201ENST00000459576 63 ntBASIC1.72□□□□□ -2.13
VPS28Q9UK41 RNU7-4P-201ENST00000516961 62 ntBASIC1.72□□□□□ -2.13
VPS28Q9UK41 AC027419.1-201ENST00000522976 328 ntBASIC1.72□□□□□ -2.13
VPS28Q9UK41 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.72□□□□□ -2.13
VPS28Q9UK41 MIR410-201ENST00000362222 80 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 RNU6-1301P-201ENST00000362724 104 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 SNORA72.1-201ENST00000363485 129 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 Y_RNA.387-201ENST00000383918 102 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 RNU6-203P-201ENST00000384038 104 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 SNORA69.1-201ENST00000390904 137 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 RNU1-78P-201ENST00000391248 165 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 RNU6-1156P-201ENST00000410365 100 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 RNU6-1304P-201ENST00000411374 106 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.71□□□□□ -2.14
VPS28Q9UK41 AL606517.2-201ENST00000442855 241 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 RPL30P15-201ENST00000457129 321 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 RNU6-625P-201ENST00000459412 107 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 AC010469.2-201ENST00000496412 480 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.71□□□□□ -2.14
VPS28Q9UK41 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.71□□□□□ -2.14
VPS28Q9UK41 SNORA40.9-201ENST00000515895 93 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 RNU6-237P-201ENST00000515985 71 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 RNU6-120P-201ENST00000516077 103 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.71□□□□□ -2.14
VPS28Q9UK41 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.71□□□□□ -2.14
VPS28Q9UK41 AC023157.2-201ENST00000540596 141 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
VPS28Q9UK41 AC022217.4-201ENST00000604389 163 ntBASIC1.71□□□□□ -2.14
VPS28Q9UK41 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.7□□□□□ -2.14
VPS28Q9UK41 MIR302D-201ENST00000362275 68 ntBASIC1.7□□□□□ -2.14
VPS28Q9UK41 RNA5SP432-201ENST00000362480 116 ntBASIC1.7□□□□□ -2.14
VPS28Q9UK41 SNORD33-201ENST00000362761 85 ntBASIC1.7□□□□□ -2.14
VPS28Q9UK41 RNU6-271P-201ENST00000363858 105 ntBASIC1.7□□□□□ -2.14
VPS28Q9UK41 Y_RNA.384-201ENST00000383909 102 ntBASIC1.7□□□□□ -2.14
VPS28Q9UK41 SNORD12B-201ENST00000410433 91 ntBASIC1.7□□□□□ -2.14
VPS28Q9UK41 MTND4P28-201ENST00000426217 387 ntBASIC1.7□□□□□ -2.14
VPS28Q9UK41 AC245047.3-201ENST00000429428 127 ntBASIC1.7□□□□□ -2.14
VPS28Q9UK41 AC245517.4-201ENST00000448601 281 ntBASIC1.7□□□□□ -2.14
VPS28Q9UK41 MIR4255-201ENST00000579351 72 ntBASIC1.7□□□□□ -2.14
VPS28Q9UK41 AL929325.1-201ENST00000603096 117 ntBASIC1.7□□□□□ -2.14
VPS28Q9UK41 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.7□□□□□ -2.14
VPS28Q9UK41 ZNF72P-201ENST00000425869 1908 ntBASIC1.7□□□□□ -2.14
VPS28Q9UK41 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
VPS28Q9UK41 Y_RNA.259-201ENST00000364619 101 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 SNORA20B-201ENST00000384220 132 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 MIR194-1-201ENST00000384892 85 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 RNU11-5P-201ENST00000391216 129 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 Y_RNA.592-201ENST00000410274 109 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 RN7SKP200-201ENST00000410564 320 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 RAB28P5-201ENST00000427490 651 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 MTCO3P10-201ENST00000455912 772 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 RPS26P55-201ENST00000471178 356 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.69□□□□□ -2.14
VPS28Q9UK41 RNA5SP445-201ENST00000515889 115 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 RNU6-470P-201ENST00000515954 104 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 AC144568.1-201ENST00000520139 137 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.69□□□□□ -2.14
VPS28Q9UK41 AC087588.2-201ENST00000617667 426 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.69□□□□□ -2.14
VPS28Q9UK41 MIR3674-201ENST00000636576 68 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 MIR1302-1-201ENST00000637932 143 ntBASIC1.69□□□□□ -2.14
VPS28Q9UK41 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
VPS28Q9UK41 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.68□□□□□ -2.14
VPS28Q9UK41 AC006026.1-201ENST00000444025 1803 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 SNORD1A-201ENST00000364968 72 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 MRPL42P3-201ENST00000401492 326 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 AL355796.1-201ENST00000406706 323 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 RNA5SP475-201ENST00000410568 110 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 AC004965.1-201ENST00000413033 213 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 MTCO3P19-201ENST00000415864 321 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.68□□□□□ -2.14
VPS28Q9UK41 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.68□□□□□ -2.14
VPS28Q9UK41 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.68□□□□□ -2.14
VPS28Q9UK41 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.68□□□□□ -2.14
VPS28Q9UK41 AC079140.2-201ENST00000506193 142 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 AC097462.1-201ENST00000514125 324 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 RNU6-277P-201ENST00000516272 106 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 AC015688.6-201ENST00000577737 104 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 MIR4801-201ENST00000582704 82 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
VPS28Q9UK41 MIR8054-201ENST00000620877 86 ntBASIC1.68□□□□□ -2.14
VPS28Q9UK41 RNU6-1123P-201ENST00000362347 106 ntBASIC1.67□□□□□ -2.14
VPS28Q9UK41 RPS20P15-201ENST00000412792 311 ntBASIC1.67□□□□□ -2.14
VPS28Q9UK41 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.67□□□□□ -2.14
VPS28Q9UK41 AC010154.1-201ENST00000425857 269 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms