Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.2□□□□□ -1.9
SSU72Q9NP77 AC097462.1-201ENST00000514125 324 ntBASIC3.2□□□□□ -1.9
SSU72Q9NP77 RNA5SP153-201ENST00000516498 76 ntBASIC3.2□□□□□ -1.9
SSU72Q9NP77 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.2□□□□□ -1.9
SSU72Q9NP77 AC106785.1-201ENST00000565935 262 ntBASIC3.2□□□□□ -1.9
SSU72Q9NP77 RPL23AP91-201ENST00000569211 455 ntBASIC3.2□□□□□ -1.9
SSU72Q9NP77 Z82209.1-201ENST00000422141 2135 ntBASIC3.2□□□□□ -1.9
SSU72Q9NP77 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
SSU72Q9NP77 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.19□□□□□ -1.9
SSU72Q9NP77 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
SSU72Q9NP77 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.19□□□□□ -1.9
SSU72Q9NP77 MIR340-201ENST00000362125 95 ntBASIC3.19□□□□□ -1.9
SSU72Q9NP77 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC3.19□□□□□ -1.9
SSU72Q9NP77 MLLT10P1-201ENST00000418346 262 ntBASIC3.19□□□□□ -1.9
SSU72Q9NP77 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.19□□□□□ -1.9
SSU72Q9NP77 MIR4506-201ENST00000584693 77 ntBASIC3.19□□□□□ -1.9
SSU72Q9NP77 ZYXP1-201ENST00000617638 118 ntBASIC3.19□□□□□ -1.9
SSU72Q9NP77 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
SSU72Q9NP77 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
SSU72Q9NP77 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
SSU72Q9NP77 Y_RNA.114-201ENST00000363265 113 ntBASIC3.18□□□□□ -1.9
SSU72Q9NP77 RNU6-1209P-201ENST00000363655 107 ntBASIC3.18□□□□□ -1.9
SSU72Q9NP77 RNU6-755P-201ENST00000364400 103 ntBASIC3.18□□□□□ -1.9
SSU72Q9NP77 MIR562-201ENST00000384894 95 ntBASIC3.18□□□□□ -1.9
SSU72Q9NP77 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.18□□□□□ -1.9
SSU72Q9NP77 AC008134.1-201ENST00000420943 193 ntBASIC3.18□□□□□ -1.9
SSU72Q9NP77 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.18□□□□□ -1.9
SSU72Q9NP77 AC063976.3-201ENST00000426849 329 ntBASIC3.18□□□□□ -1.9
SSU72Q9NP77 AC006028.1-201ENST00000438379 402 ntBASIC3.18□□□□□ -1.9
SSU72Q9NP77 Y_RNA.692-201ENST00000516627 105 ntBASIC3.18□□□□□ -1.9
SSU72Q9NP77 Y_RNA.757-201ENST00000578934 114 ntBASIC3.18□□□□□ -1.9
SSU72Q9NP77 AC131055.1-201ENST00000584626 316 ntBASIC3.18□□□□□ -1.9
SSU72Q9NP77 AL020997.2-201ENST00000602607 184 ntBASIC3.18□□□□□ -1.9
SSU72Q9NP77 MIR6810-201ENST00000622701 70 ntBASIC3.18□□□□□ -1.9
SSU72Q9NP77 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.18□□□□□ -1.9
SSU72Q9NP77 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
SSU72Q9NP77 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
SSU72Q9NP77 MTND5P32-201ENST00000560711 1802 ntBASIC3.17□□□□□ -1.9
SSU72Q9NP77 RNU4-35P-201ENST00000362588 141 ntBASIC3.17□□□□□ -1.9
SSU72Q9NP77 RNU6-438P-201ENST00000365561 103 ntBASIC3.17□□□□□ -1.9
SSU72Q9NP77 U6atac.2-201ENST00000408644 118 ntBASIC3.17□□□□□ -1.9
SSU72Q9NP77 AC025518.1-201ENST00000479856 347 ntBASIC3.17□□□□□ -1.9
SSU72Q9NP77 RNU2-34P-201ENST00000516534 121 ntBASIC3.17□□□□□ -1.9
SSU72Q9NP77 MIR4438-201ENST00000585271 93 ntBASIC3.17□□□□□ -1.9
SSU72Q9NP77 U2.20-201ENST00000613956 192 ntBASIC3.17□□□□□ -1.9
SSU72Q9NP77 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.17□□□□□ -1.9
SSU72Q9NP77 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.17□□□□□ -1.9
SSU72Q9NP77 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
SSU72Q9NP77 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
SSU72Q9NP77 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.16□□□□□ -1.9
SSU72Q9NP77 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SSU72Q9NP77 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SSU72Q9NP77 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.16□□□□□ -1.9
SSU72Q9NP77 RNU6-1164P-201ENST00000364428 107 ntBASIC3.16□□□□□ -1.9
SSU72Q9NP77 MIR218-1-201ENST00000384999 110 ntBASIC3.16□□□□□ -1.9
SSU72Q9NP77 RNU2-48P-201ENST00000410694 191 ntBASIC3.16□□□□□ -1.9
SSU72Q9NP77 RN7SKP123-201ENST00000410732 291 ntBASIC3.16□□□□□ -1.9
SSU72Q9NP77 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.16□□□□□ -1.9
SSU72Q9NP77 RPL39P40-201ENST00000445481 146 ntBASIC3.16□□□□□ -1.9
SSU72Q9NP77 AP001486.1-201ENST00000463339 476 ntBASIC3.16□□□□□ -1.9
SSU72Q9NP77 CYCTP-201ENST00000504253 315 ntBASIC3.16□□□□□ -1.9
SSU72Q9NP77 RNU7-172P-201ENST00000517125 64 ntBASIC3.16□□□□□ -1.9
SSU72Q9NP77 RNA5SP490-201ENST00000517141 136 ntBASIC3.16□□□□□ -1.9
SSU72Q9NP77 MIR2682-201ENST00000580305 110 ntBASIC3.16□□□□□ -1.9
SSU72Q9NP77 AC108081.1-201ENST00000604358 221 ntBASIC3.16□□□□□ -1.9
SSU72Q9NP77 uc_338.25-201ENST00000613756 156 ntBASIC3.16□□□□□ -1.9
SSU72Q9NP77 MIR7515-201ENST00000637837 67 ntBASIC3.16□□□□□ -1.9
SSU72Q9NP77 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SSU72Q9NP77 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
SSU72Q9NP77 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.16□□□□□ -1.9
SSU72Q9NP77 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.15□□□□□ -1.9
SSU72Q9NP77 AL161912.2-201ENST00000565707 3007 ntBASIC3.15□□□□□ -1.9
SSU72Q9NP77 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
SSU72Q9NP77 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.15□□□□□ -1.91
SSU72Q9NP77 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SSU72Q9NP77 RNU6-309P-201ENST00000364573 106 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 RNU6-1080P-201ENST00000383982 107 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 Y_RNA.486-201ENST00000384398 107 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 RNU2-70P-201ENST00000410718 179 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 Y_RNA.617-201ENST00000410920 90 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 RNU2-32P-201ENST00000411193 191 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 AC091390.1-201ENST00000433904 331 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.15□□□□□ -1.91
SSU72Q9NP77 RN7SL807P-201ENST00000470923 297 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 AC093259.1-201ENST00000509755 300 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 SNORD33.1-201ENST00000516213 88 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 SNORD59.2-201ENST00000516873 68 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 SCARNA3-201ENST00000517097 143 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 AC011604.1-201ENST00000545978 196 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 MTND5P34-201ENST00000568888 325 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 MIR6758-201ENST00000620653 63 ntBASIC3.15□□□□□ -1.91
SSU72Q9NP77 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
SSU72Q9NP77 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.14□□□□□ -1.91
SSU72Q9NP77 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SSU72Q9NP77 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
SSU72Q9NP77 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
SSU72Q9NP77 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
SSU72Q9NP77 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.14□□□□□ -1.91
SSU72Q9NP77 Y_RNA.66-201ENST00000362862 102 ntBASIC3.14□□□□□ -1.91
SSU72Q9NP77 RNU1-23P-201ENST00000363361 144 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms