Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 MIR548X2-201ENST00000579776 100 ntBASIC2.68□□□□□ -1.98
COL4A3Q01955 AL391813.1-201ENST00000603098 260 ntBASIC2.68□□□□□ -1.98
COL4A3Q01955 uc_338.14-201ENST00000613162 166 ntBASIC2.68□□□□□ -1.98
COL4A3Q01955 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.68□□□□□ -1.98
COL4A3Q01955 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.68□□□□□ -1.98
COL4A3Q01955 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC2.67□□□□□ -1.98
COL4A3Q01955 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL4A3Q01955 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.67□□□□□ -1.98
COL4A3Q01955 U3.8-201ENST00000363675 217 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 RNU6-1048P-201ENST00000364054 107 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 snoU2_19.4-201ENST00000364329 80 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 Y_RNA.310-201ENST00000365063 113 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 SNORA72.4-201ENST00000384174 132 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 RNU6-376P-201ENST00000384731 106 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 MIR513C-201ENST00000401352 84 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 HMGN2P23-201ENST00000456759 269 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 RN7SL499P-201ENST00000481141 276 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.67□□□□□ -1.98
COL4A3Q01955 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.67□□□□□ -1.98
COL4A3Q01955 RNU6-453P-201ENST00000516819 85 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 AP000867.2-201ENST00000532468 320 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 MIR5688-201ENST00000580619 83 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 DNAJC19P2-201ENST00000593340 302 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 RPL17P51-201ENST00000605218 238 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 AC090115.4-201ENST00000609970 188 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 Y_RNA.802-201ENST00000614892 130 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 AL353997.5-201ENST00000618886 171 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.67□□□□□ -1.98
COL4A3Q01955 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
COL4A3Q01955 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
COL4A3Q01955 AC010332.2-201ENST00000613083 1904 ntBASIC2.67□□□□□ -1.98
COL4A3Q01955 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
COL4A3Q01955 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
COL4A3Q01955 Y_RNA.116-201ENST00000363292 103 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 MIR548B-201ENST00000385247 97 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 SNORA40-201ENST00000388090 126 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 AL355497.1-201ENST00000406262 551 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 RNU6-735P-201ENST00000410612 107 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 RPL30P13-201ENST00000418873 348 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 TOMM22P2-201ENST00000430735 237 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 AL135790.2-201ENST00000437701 267 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.66□□□□□ -1.98
COL4A3Q01955 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.66□□□□□ -1.98
COL4A3Q01955 SCARNA8-201ENST00000515924 131 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 AC090616.3-201ENST00000582184 217 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 AC069294.1-201ENST00000608397 350 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 AL365222.1-201ENST00000614661 98 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
COL4A3Q01955 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
COL4A3Q01955 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
COL4A3Q01955 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
COL4A3Q01955 AC010733.2-201ENST00000589496 5702 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC2.66□□□□□ -1.98
COL4A3Q01955 AC026241.1-201ENST00000517873 2142 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
COL4A3Q01955 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
COL4A3Q01955 Y_RNA.337-201ENST00000365312 102 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 RNU6-144P-201ENST00000383951 107 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 RNU6-855P-201ENST00000410395 104 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 RNA5SP504-201ENST00000410676 117 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.66□□□□□ -1.98
COL4A3Q01955 SNORA70.12-201ENST00000516084 153 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 DEFB131C-201ENST00000528817 165 ntBASIC2.66□□□□□ -1.98
COL4A3Q01955 AC016717.2-201ENST00000609089 5141 ntBASIC2.65□□□□□ -1.99
COL4A3Q01955 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC2.65□□□□□ -1.99
COL4A3Q01955 Y_RNA.81-201ENST00000362997 102 ntBASIC2.65□□□□□ -1.99
COL4A3Q01955 Y_RNA.572-201ENST00000384757 98 ntBASIC2.65□□□□□ -1.99
COL4A3Q01955 MIR569-201ENST00000385228 96 ntBASIC2.65□□□□□ -1.99
COL4A3Q01955 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.65□□□□□ -1.99
COL4A3Q01955 RNA5SP480-201ENST00000516840 109 ntBASIC2.65□□□□□ -1.99
COL4A3Q01955 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.65□□□□□ -1.99
COL4A3Q01955 AC103810.6-201ENST00000606708 136 ntBASIC2.65□□□□□ -1.99
COL4A3Q01955 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.65□□□□□ -1.99
COL4A3Q01955 CTSLP2-204ENST00000629029 392 ntBASIC2.65□□□□□ -1.99
COL4A3Q01955 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
COL4A3Q01955 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
COL4A3Q01955 AC002546.1-201ENST00000588041 2504 ntBASIC2.65□□□□□ -1.99
COL4A3Q01955 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
COL4A3Q01955 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
COL4A3Q01955 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.64□□□□□ -1.99
COL4A3Q01955 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
COL4A3Q01955 RNU6-1305P-201ENST00000364353 104 ntBASIC2.64□□□□□ -1.99
COL4A3Q01955 SNORA12-201ENST00000391162 147 ntBASIC2.64□□□□□ -1.99
COL4A3Q01955 RNA5SP38-201ENST00000410750 119 ntBASIC2.64□□□□□ -1.99
COL4A3Q01955 Y_RNA.629-201ENST00000411368 105 ntBASIC2.64□□□□□ -1.99
COL4A3Q01955 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.64□□□□□ -1.99
COL4A3Q01955 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.64□□□□□ -1.99
COL4A3Q01955 RNU7-141P-201ENST00000459304 62 ntBASIC2.64□□□□□ -1.99
COL4A3Q01955 AC107027.2-201ENST00000512197 115 ntBASIC2.64□□□□□ -1.99
COL4A3Q01955 SNORA9.3-201ENST00000516383 129 ntBASIC2.64□□□□□ -1.99
COL4A3Q01955 AC109810.1-201ENST00000534066 224 ntBASIC2.64□□□□□ -1.99
COL4A3Q01955 AC008739.2-201ENST00000597006 317 ntBASIC2.64□□□□□ -1.99
COL4A3Q01955 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.64□□□□□ -1.99
COL4A3Q01955 AC008873.1-201ENST00000625051 138 ntBASIC2.64□□□□□ -1.99
COL4A3Q01955 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
COL4A3Q01955 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
COL4A3Q01955 MAPK10-322ENST00000641485 4530 ntBASIC2.64□□□□□ -1.99
COL4A3Q01955 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
COL4A3Q01955 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.64□□□□□ -1.99
COL4A3Q01955 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms