Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC9Q9Y3X0 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC9Q9Y3X0 snoU2-30.2-201ENST00000362805 70 ntBASIC3.39□□□□□ -1.87
CCDC9Q9Y3X0 Y_RNA.140-201ENST00000363474 103 ntBASIC3.39□□□□□ -1.87
CCDC9Q9Y3X0 Y_RNA.230-201ENST00000364348 109 ntBASIC3.39□□□□□ -1.87
CCDC9Q9Y3X0 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.39□□□□□ -1.87
CCDC9Q9Y3X0 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC9Q9Y3X0 AC234781.5-201ENST00000508429 271 ntBASIC3.39□□□□□ -1.87
CCDC9Q9Y3X0 TRAPPC2P7-201ENST00000509650 231 ntBASIC3.39□□□□□ -1.87
CCDC9Q9Y3X0 AL353149.1-201ENST00000610667 244 ntBASIC3.39□□□□□ -1.87
CCDC9Q9Y3X0 AC091932.3-201ENST00000624223 323 ntBASIC3.39□□□□□ -1.87
CCDC9Q9Y3X0 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC9Q9Y3X0 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 RNA5SP281-201ENST00000516504 135 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 AC008737.2-201ENST00000599446 118 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 AC136443.5-201ENST00000603741 370 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 U2.15-201ENST00000611544 191 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 U2.16-201ENST00000613119 191 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 U2.12-201ENST00000613778 191 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 U2.20-201ENST00000613956 192 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 U2.9-201ENST00000615427 191 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 U2.11-201ENST00000616345 191 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 U2.2-201ENST00000616535 191 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 U2.3-201ENST00000617785 191 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 U2.19-201ENST00000618602 191 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 RNU2-1-201ENST00000618664 191 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 U2.6-201ENST00000619225 191 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 U2.5-201ENST00000619465 191 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 U2.10-201ENST00000620268 191 ntBASIC3.38□□□□□ -1.87
CCDC9Q9Y3X0 RNU6-463P-201ENST00000384340 107 ntBASIC3.37□□□□□ -1.87
CCDC9Q9Y3X0 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
CCDC9Q9Y3X0 AC005002.2-201ENST00000438228 269 ntBASIC3.37□□□□□ -1.87
CCDC9Q9Y3X0 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC9Q9Y3X0 RNU6-397P-201ENST00000516226 104 ntBASIC3.37□□□□□ -1.87
CCDC9Q9Y3X0 RNU6-764P-201ENST00000516396 105 ntBASIC3.37□□□□□ -1.87
CCDC9Q9Y3X0 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC9Q9Y3X0 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC9Q9Y3X0 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC9Q9Y3X0 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC9Q9Y3X0 RNU6-862P-201ENST00000362804 105 ntBASIC3.36□□□□□ -1.87
CCDC9Q9Y3X0 Y_RNA.152-201ENST00000363578 100 ntBASIC3.36□□□□□ -1.87
CCDC9Q9Y3X0 Y_RNA.459-201ENST00000384251 102 ntBASIC3.36□□□□□ -1.87
CCDC9Q9Y3X0 RNU5A-5P-201ENST00000411054 116 ntBASIC3.36□□□□□ -1.87
CCDC9Q9Y3X0 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC9Q9Y3X0 AL390729.2-201ENST00000416137 156 ntBASIC3.36□□□□□ -1.87
CCDC9Q9Y3X0 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC9Q9Y3X0 HMGN2P23-201ENST00000456759 269 ntBASIC3.36□□□□□ -1.87
CCDC9Q9Y3X0 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC9Q9Y3X0 AC113195.1-201ENST00000579952 141 ntBASIC3.36□□□□□ -1.87
CCDC9Q9Y3X0 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 RNU1-96P-201ENST00000364163 162 ntBASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 RNU6-454P-201ENST00000364292 107 ntBASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 Y_RNA.462-201ENST00000384268 102 ntBASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 AL451074.5-201ENST00000415894 435 ntBASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 RPS29P6-201ENST00000438196 145 ntBASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 IPO7P1-201ENST00000442031 636 ntBASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 SUMO1P2-201ENST00000452524 304 ntBASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 AC010598.1-201ENST00000510378 103 ntBASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 AC021269.2-201ENST00000532318 330 ntBASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 AL355297.3-201ENST00000604082 446 ntBASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 MIR6873-201ENST00000622788 63 ntBASIC3.35□□□□□ -1.87
CCDC9Q9Y3X0 Y_RNA.143-201ENST00000363520 106 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 RNU6-417P-201ENST00000384712 107 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 RNA5SP501-201ENST00000410990 112 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 CST2P1-201ENST00000425770 87 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 SNORD65B-201ENST00000459126 73 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 RNA5SP82-201ENST00000516707 92 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 RNU6-826P-201ENST00000516827 104 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 SNORA40.15-201ENST00000516884 107 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 AC027419.1-201ENST00000522976 328 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 AL137100.2-201ENST00000555786 315 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 AC055872.1-201ENST00000570978 278 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 AL021879.1-201ENST00000611756 288 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 7SK.10-201ENST00000621414 298 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 AC006435.5-201ENST00000624486 112 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 MIR338-201ENST00000636369 67 ntBASIC3.34□□□□□ -1.87
CCDC9Q9Y3X0 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 SNORA16B-201ENST00000364674 135 ntBASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 MIR515-2-201ENST00000384883 83 ntBASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 MIR515-1-201ENST00000384884 83 ntBASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 SNORA48.1-201ENST00000390879 135 ntBASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-985P-201ENST00000410182 104 ntBASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 RNU6-1137P-201ENST00000517073 99 ntBASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 AC007336.1-201ENST00000576365 3828 ntBASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 MIR3668-201ENST00000582138 75 ntBASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 AC069114.2-201ENST00000604699 304 ntBASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 RAC1P9-201ENST00000604990 392 ntBASIC3.33□□□□□ -1.88
CCDC9Q9Y3X0 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 130.1 ms