Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MIRLET7F2-201ENST00000385277 83 ntBASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 MIR591-201ENST00000385290 95 ntBASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 RNU1-101P-201ENST00000391171 127 ntBASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 RNU2-63P-201ENST00000410792 194 ntBASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 Y_RNA.651-201ENST00000459380 103 ntBASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 Y_RNA.714-201ENST00000517065 90 ntBASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 AC073413.2-201ENST00000604332 360 ntBASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 AC025166.1-201ENST00000612411 163 ntBASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 MIR4727-201ENST00000622232 55 ntBASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
LIMD1Q9UGP4 MAPK10-253ENST00000641010 4072 ntBASIC4□□□□□ -1.77
LIMD1Q9UGP4 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
LIMD1Q9UGP4 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
LIMD1Q9UGP4 AC018630.2-201ENST00000534866 2403 ntBASIC4□□□□□ -1.77
LIMD1Q9UGP4 FAM35DP-201ENST00000323387 2712 ntBASIC4□□□□□ -1.77
LIMD1Q9UGP4 SNORA68.1-201ENST00000364537 132 ntBASIC4□□□□□ -1.77
LIMD1Q9UGP4 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC4□□□□□ -1.77
LIMD1Q9UGP4 RN7SKP57-201ENST00000517248 293 ntBASIC4□□□□□ -1.77
LIMD1Q9UGP4 AL358944.1-201ENST00000528537 144 ntBASIC4□□□□□ -1.77
LIMD1Q9UGP4 AC087685.1-201ENST00000587507 141 ntBASIC4□□□□□ -1.77
LIMD1Q9UGP4 MIR3651-201ENST00000630427 90 ntBASIC4□□□□□ -1.77
LIMD1Q9UGP4 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC4□□□□□ -1.77
LIMD1Q9UGP4 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4□□□□□ -1.77
LIMD1Q9UGP4 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
LIMD1Q9UGP4 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 Y_RNA.35-201ENST00000362601 101 ntBASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 CD24P4-201ENST00000382840 243 ntBASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 SNORD24-201ENST00000383884 75 ntBASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 SNORA3C-201ENST00000408792 125 ntBASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 RNU6-1186P-201ENST00000410429 97 ntBASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 Y_RNA.649-201ENST00000459077 103 ntBASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 RNU6-113P-201ENST00000516653 101 ntBASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
LIMD1Q9UGP4 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
LIMD1Q9UGP4 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LIMD1Q9UGP4 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.98□□□□□ -1.77
LIMD1Q9UGP4 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
LIMD1Q9UGP4 snoU2-30.2-201ENST00000362805 70 ntBASIC3.98□□□□□ -1.77
LIMD1Q9UGP4 SNORA48.2-201ENST00000390926 124 ntBASIC3.98□□□□□ -1.77
LIMD1Q9UGP4 SNRPGP10-201ENST00000432323 225 ntBASIC3.98□□□□□ -1.77
LIMD1Q9UGP4 AL021397.1-201ENST00000451806 248 ntBASIC3.98□□□□□ -1.77
LIMD1Q9UGP4 RNU6-781P-201ENST00000516377 101 ntBASIC3.98□□□□□ -1.77
LIMD1Q9UGP4 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.98□□□□□ -1.77
LIMD1Q9UGP4 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
LIMD1Q9UGP4 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 RNA5SP502-201ENST00000362694 119 ntBASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 RNU6-1255P-201ENST00000363434 112 ntBASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 RNU6-1164P-201ENST00000364428 107 ntBASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 MIR490-201ENST00000384865 128 ntBASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 MIR1251-201ENST00000408552 70 ntBASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 AC060773.1-201ENST00000421698 310 ntBASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 AL357552.1-201ENST00000445254 415 ntBASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 RN7SL271P-201ENST00000487601 295 ntBASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 MRPS17P9-201ENST00000511924 393 ntBASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 AC011406.1-201ENST00000512440 370 ntBASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 RNU6-991P-201ENST00000516168 107 ntBASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 MIR3129-201ENST00000581095 76 ntBASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 AL359075.3-201ENST00000613288 217 ntBASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
LIMD1Q9UGP4 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.77
LIMD1Q9UGP4 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 RNA5SP50-201ENST00000363731 107 ntBASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 MIR561-201ENST00000385216 97 ntBASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 AC244505.4-201ENST00000434905 287 ntBASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 AL353689.1-201ENST00000438895 199 ntBASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 SSXP5-201ENST00000443473 287 ntBASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 NDUFA4P2-201ENST00000489989 244 ntBASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 AC023141.11-201ENST00000508864 202 ntBASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 RNU6-412P-201ENST00000516434 106 ntBASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 AC091152.2-201ENST00000591628 2569 ntBASIC3.96□□□□□ -1.78
LIMD1Q9UGP4 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 RNU6-888P-201ENST00000363010 101 ntBASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 RNU1-23P-201ENST00000363361 144 ntBASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 AC233266.1-201ENST00000454518 96 ntBASIC3.95□□□□□ -1.78
LIMD1Q9UGP4 RNU6-168P-201ENST00000516189 101 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms