Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 MIR3145-201ENST00000580727 82 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 AC005357.1-201ENST00000588399 301 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.66□□□□□ -1.98
TDP1Q9NUW8 DEFB117-201ENST00000602356 141 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 U2.14-201ENST00000615943 113 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 U6.115-201ENST00000636045 103 ntBASIC2.66□□□□□ -1.98
TDP1Q9NUW8 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
TDP1Q9NUW8 SNORA25.1-201ENST00000362326 128 ntBASIC2.65□□□□□ -1.99
TDP1Q9NUW8 RNU6-1266P-201ENST00000362794 105 ntBASIC2.65□□□□□ -1.99
TDP1Q9NUW8 RNU6-1318P-201ENST00000365389 103 ntBASIC2.65□□□□□ -1.99
TDP1Q9NUW8 RNU6-57P-201ENST00000411348 103 ntBASIC2.65□□□□□ -1.99
TDP1Q9NUW8 HMGN2P35-201ENST00000412164 270 ntBASIC2.65□□□□□ -1.99
TDP1Q9NUW8 MTCO1P5-201ENST00000433573 344 ntBASIC2.65□□□□□ -1.99
TDP1Q9NUW8 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.65□□□□□ -1.99
TDP1Q9NUW8 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.65□□□□□ -1.99
TDP1Q9NUW8 RNU6-221P-201ENST00000459541 99 ntBASIC2.65□□□□□ -1.99
TDP1Q9NUW8 AC010531.2-201ENST00000465012 153 ntBASIC2.65□□□□□ -1.99
TDP1Q9NUW8 RNU6-436P-201ENST00000516171 114 ntBASIC2.65□□□□□ -1.99
TDP1Q9NUW8 SNORD53-201ENST00000579969 78 ntBASIC2.65□□□□□ -1.99
TDP1Q9NUW8 MIR6733-201ENST00000635723 61 ntBASIC2.65□□□□□ -1.99
TDP1Q9NUW8 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.65□□□□□ -1.99
TDP1Q9NUW8 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.65□□□□□ -1.99
TDP1Q9NUW8 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
TDP1Q9NUW8 Y_RNA.20-201ENST00000362479 113 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 Y_RNA.54-201ENST00000362766 105 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 RNU6-324P-201ENST00000363957 106 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 SNORD27-201ENST00000363981 72 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 Y_RNA.329-201ENST00000365209 107 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 RNU6-1235P-201ENST00000384559 107 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 AL031003.1-201ENST00000404229 172 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 AL590004.2-201ENST00000404787 371 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 AC123900.1-201ENST00000420390 96 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.64□□□□□ -1.99
TDP1Q9NUW8 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.64□□□□□ -1.99
TDP1Q9NUW8 MTCO1P44-201ENST00000441935 243 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 RNU6-498P-201ENST00000459468 107 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 AC091959.1-201ENST00000495857 238 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 RNA5SP76-201ENST00000516277 87 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 RPPH1-2P-201ENST00000516688 293 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 RPL21P9-201ENST00000556149 474 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 AC064859.1-201ENST00000624741 174 ntBASIC2.64□□□□□ -1.99
TDP1Q9NUW8 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
TDP1Q9NUW8 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
TDP1Q9NUW8 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
TDP1Q9NUW8 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
TDP1Q9NUW8 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.63□□□□□ -1.99
TDP1Q9NUW8 AC009487.4-201ENST00000624969 3585 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.63□□□□□ -1.99
TDP1Q9NUW8 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
TDP1Q9NUW8 Y_RNA.44-201ENST00000362676 108 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 RNU4-80P-201ENST00000363200 141 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 Y_RNA.277-201ENST00000364754 102 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 RNU6-514P-201ENST00000384208 107 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 Y_RNA.539-201ENST00000384635 107 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.63□□□□□ -1.99
TDP1Q9NUW8 AC108059.2-201ENST00000434626 151 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 PRELID3BP1-201ENST00000457142 540 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 RNU7-26P-201ENST00000458980 63 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 RNA5SP24-201ENST00000516478 95 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.63□□□□□ -1.99
TDP1Q9NUW8 NDUFA5P6-201ENST00000542110 379 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 AC005828.6-201ENST00000606610 232 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 AC078938.1-201ENST00000620993 318 ntBASIC2.63□□□□□ -1.99
TDP1Q9NUW8 MIR340-201ENST00000362125 95 ntBASIC2.62□□□□□ -1.99
TDP1Q9NUW8 RNU6-1072P-201ENST00000384703 107 ntBASIC2.62□□□□□ -1.99
TDP1Q9NUW8 RNU6-443P-201ENST00000384780 107 ntBASIC2.62□□□□□ -1.99
TDP1Q9NUW8 MIR518C-201ENST00000384822 101 ntBASIC2.62□□□□□ -1.99
TDP1Q9NUW8 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.62□□□□□ -1.99
TDP1Q9NUW8 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.62□□□□□ -1.99
TDP1Q9NUW8 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.62□□□□□ -1.99
TDP1Q9NUW8 RNU2-34P-201ENST00000516534 121 ntBASIC2.62□□□□□ -1.99
TDP1Q9NUW8 RNU6-111P-201ENST00000517179 105 ntBASIC2.62□□□□□ -1.99
TDP1Q9NUW8 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.62□□□□□ -1.99
TDP1Q9NUW8 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.62□□□□□ -1.99
TDP1Q9NUW8 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
TDP1Q9NUW8 Y_RNA.361-201ENST00000365515 120 ntBASIC2.61□□□□□ -1.99
TDP1Q9NUW8 SNORA70B-201ENST00000384210 135 ntBASIC2.61□□□□□ -1.99
TDP1Q9NUW8 RNU6-847P-201ENST00000411115 108 ntBASIC2.61□□□□□ -1.99
TDP1Q9NUW8 SRIP3-201ENST00000413200 219 ntBASIC2.61□□□□□ -1.99
TDP1Q9NUW8 AC016909.1-201ENST00000415916 166 ntBASIC2.61□□□□□ -1.99
TDP1Q9NUW8 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.61□□□□□ -1.99
TDP1Q9NUW8 AL357134.1-201ENST00000445848 426 ntBASIC2.61□□□□□ -1.99
TDP1Q9NUW8 SNORA4.4-201ENST00000515921 135 ntBASIC2.61□□□□□ -1.99
TDP1Q9NUW8 RNU6-191P-201ENST00000516295 94 ntBASIC2.61□□□□□ -1.99
TDP1Q9NUW8 RNU6-794P-201ENST00000517261 64 ntBASIC2.61□□□□□ -1.99
TDP1Q9NUW8 AC025647.1-201ENST00000517879 253 ntBASIC2.61□□□□□ -1.99
TDP1Q9NUW8 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.61□□□□□ -1.99
TDP1Q9NUW8 MIR3684-201ENST00000579779 74 ntBASIC2.61□□□□□ -1.99
TDP1Q9NUW8 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.61□□□□□ -1.99
TDP1Q9NUW8 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
TDP1Q9NUW8 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.61□□□□□ -1.99
TDP1Q9NUW8 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
TDP1Q9NUW8 Z82195.2-201ENST00000612348 18351 ntBASIC2.6□□□□□ -1.99
TDP1Q9NUW8 Y_RNA.257-201ENST00000364596 102 ntBASIC2.6□□□□□ -1.99
TDP1Q9NUW8 AL355796.1-201ENST00000406706 323 ntBASIC2.6□□□□□ -1.99
TDP1Q9NUW8 MIR1261-201ENST00000408659 82 ntBASIC2.6□□□□□ -1.99
TDP1Q9NUW8 AL139109.1-201ENST00000455491 297 ntBASIC2.6□□□□□ -1.99
TDP1Q9NUW8 SNORD65B-201ENST00000459126 73 ntBASIC2.6□□□□□ -1.99
TDP1Q9NUW8 RNU1-41P-201ENST00000516161 162 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 125.2 ms