Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AC021269.2-201ENST00000532318 330 ntBASIC3.08□□□□□ -1.92
NKX3-2P78367 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.08□□□□□ -1.92
NKX3-2P78367 AC090115.4-201ENST00000609970 188 ntBASIC3.08□□□□□ -1.92
NKX3-2P78367 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
NKX3-2P78367 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.07□□□□□ -1.92
NKX3-2P78367 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
NKX3-2P78367 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
NKX3-2P78367 Y_RNA.23-201ENST00000362496 106 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 Y_RNA.75-201ENST00000362927 97 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 Y_RNA.121-201ENST00000363309 113 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 snoU2_19.4-201ENST00000364329 80 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 RNU6-1305P-201ENST00000364353 104 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 SNORD32B-201ENST00000364460 84 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 SNORA72.4-201ENST00000384174 132 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 MIR767-201ENST00000390228 109 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 RPS20P10-201ENST00000451209 253 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 RPS27P26-201ENST00000494583 239 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.07□□□□□ -1.92
NKX3-2P78367 RN7SKP43-201ENST00000516173 320 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 RNA5SP282-201ENST00000516355 108 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.07□□□□□ -1.92
NKX3-2P78367 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.07□□□□□ -1.92
NKX3-2P78367 MIR4506-201ENST00000584693 77 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.07□□□□□ -1.92
NKX3-2P78367 AC008873.1-201ENST00000625051 138 ntBASIC3.07□□□□□ -1.92
NKX3-2P78367 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.07□□□□□ -1.92
NKX3-2P78367 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
NKX3-2P78367 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
NKX3-2P78367 AC108206.1-201ENST00000570186 4159 ntBASIC3.06□□□□□ -1.92
NKX3-2P78367 RNU4-84P-201ENST00000364200 139 ntBASIC3.06□□□□□ -1.92
NKX3-2P78367 Y_RNA.287-201ENST00000364853 94 ntBASIC3.06□□□□□ -1.92
NKX3-2P78367 RNU6-449P-201ENST00000383914 107 ntBASIC3.06□□□□□ -1.92
NKX3-2P78367 RPL21P3-201ENST00000395517 478 ntBASIC3.06□□□□□ -1.92
NKX3-2P78367 RNU6-855P-201ENST00000410395 104 ntBASIC3.06□□□□□ -1.92
NKX3-2P78367 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.06□□□□□ -1.92
NKX3-2P78367 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.06□□□□□ -1.92
NKX3-2P78367 AC096725.1-201ENST00000514266 313 ntBASIC3.06□□□□□ -1.92
NKX3-2P78367 RNA5SP385-201ENST00000515947 110 ntBASIC3.06□□□□□ -1.92
NKX3-2P78367 MIR449C-201ENST00000516047 92 ntBASIC3.06□□□□□ -1.92
NKX3-2P78367 RNU6-1098P-201ENST00000516772 96 ntBASIC3.06□□□□□ -1.92
NKX3-2P78367 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.06□□□□□ -1.92
NKX3-2P78367 RPL30P11-203ENST00000598995 310 ntBASIC3.06□□□□□ -1.92
NKX3-2P78367 MTND1P7-201ENST00000632801 297 ntBASIC3.06□□□□□ -1.92
NKX3-2P78367 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
NKX3-2P78367 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.06□□□□□ -1.92
NKX3-2P78367 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX3-2P78367 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.05□□□□□ -1.92
NKX3-2P78367 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
NKX3-2P78367 RNA5SP139-201ENST00000364340 117 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 Y_RNA.293-201ENST00000364908 93 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 Y_RNA.310-201ENST00000365063 113 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 Y_RNA.361-201ENST00000365515 120 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 Y_RNA.368-201ENST00000365547 113 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 MIR512-1-201ENST00000384913 84 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 RNU6-131P-201ENST00000391144 107 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 MIR1261-201ENST00000408659 82 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 RN7SKP123-201ENST00000410732 291 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 RNA5SP508-201ENST00000411327 119 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX3-2P78367 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX3-2P78367 Y_RNA.797-201ENST00000515977 94 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX3-2P78367 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX3-2P78367 AC069294.1-201ENST00000608397 350 ntBASIC3.05□□□□□ -1.92
NKX3-2P78367 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX3-2P78367 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
NKX3-2P78367 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX3-2P78367 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
NKX3-2P78367 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX3-2P78367 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.04□□□□□ -1.92
NKX3-2P78367 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
NKX3-2P78367 MIR26A1-201ENST00000362205 77 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 RNA5SP432-201ENST00000362480 116 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 Y_RNA.172-201ENST00000363765 102 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 RNU6-275P-201ENST00000364910 107 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 Y_RNA.341-201ENST00000365341 102 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 Y_RNA.357-201ENST00000365487 109 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 Y_RNA.400-201ENST00000383963 111 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 MIR626-201ENST00000385032 94 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 MIR887-201ENST00000401258 79 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 RNU6-710P-201ENST00000410424 105 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX3-2P78367 RPL23AP58-201ENST00000440453 469 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 HMGN2P9-201ENST00000476875 229 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.04□□□□□ -1.92
NKX3-2P78367 SCARNA17.1-201ENST00000516211 143 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 SCARNA17.2-201ENST00000516334 143 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 SNORD116-25-201ENST00000516517 92 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 RNA5SP148-201ENST00000516527 94 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 RNU6-56P-201ENST00000516986 93 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 AC109329.2-201ENST00000519658 482 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC3.04□□□□□ -1.92
NKX3-2P78367 AC007536.1-201ENST00000533382 349 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 MIR4765-201ENST00000585007 77 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 AC008739.2-201ENST00000597006 317 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 AL670379.2-201ENST00000604983 252 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 SCARNA17.4-201ENST00000614296 143 ntBASIC3.04□□□□□ -1.92
NKX3-2P78367 MIR6715A-201ENST00000615929 79 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms