Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RNU6-62P-201ENST00000516526 102 ntBASIC3.11□□□□□ -1.91
RNF4P78317 AC107934.2-201ENST00000518653 310 ntBASIC3.11□□□□□ -1.91
RNF4P78317 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.11□□□□□ -1.91
RNF4P78317 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.11□□□□□ -1.91
RNF4P78317 AC090115.4-201ENST00000609970 188 ntBASIC3.11□□□□□ -1.91
RNF4P78317 AL365222.1-201ENST00000614661 98 ntBASIC3.11□□□□□ -1.91
RNF4P78317 MIR5739-201ENST00000619803 80 ntBASIC3.11□□□□□ -1.91
RNF4P78317 AC012640.5-201ENST00000623897 319 ntBASIC3.11□□□□□ -1.91
RNF4P78317 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.11□□□□□ -1.91
RNF4P78317 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.11□□□□□ -1.91
RNF4P78317 AC017071.1-201ENST00000564407 2204 ntBASIC3.11□□□□□ -1.91
RNF4P78317 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
RNF4P78317 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
RNF4P78317 PWAR6-201ENST00000552334 4618 ntBASIC3.1□□□□□ -1.91
RNF4P78317 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.1□□□□□ -1.91
RNF4P78317 RNU4-13P-201ENST00000364019 141 ntBASIC3.1□□□□□ -1.91
RNF4P78317 SNORA68.1-201ENST00000364537 132 ntBASIC3.1□□□□□ -1.91
RNF4P78317 RNU6-1240P-201ENST00000365155 104 ntBASIC3.1□□□□□ -1.91
RNF4P78317 RNU6-1154P-201ENST00000391001 104 ntBASIC3.1□□□□□ -1.91
RNF4P78317 MIR1278-201ENST00000408753 81 ntBASIC3.1□□□□□ -1.91
RNF4P78317 AL161788.1-201ENST00000441805 169 ntBASIC3.1□□□□□ -1.91
RNF4P78317 RN7SL601P-201ENST00000471221 293 ntBASIC3.1□□□□□ -1.91
RNF4P78317 RNU7-116P-201ENST00000516940 62 ntBASIC3.1□□□□□ -1.91
RNF4P78317 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.1□□□□□ -1.91
RNF4P78317 AC015720.1-201ENST00000565251 277 ntBASIC3.1□□□□□ -1.91
RNF4P78317 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
RNF4P78317 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.09□□□□□ -1.91
RNF4P78317 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
RNF4P78317 MIR208A-201ENST00000362287 71 ntBASIC3.09□□□□□ -1.91
RNF4P78317 RNU4-41P-201ENST00000364426 143 ntBASIC3.09□□□□□ -1.91
RNF4P78317 RNU6-805P-201ENST00000365643 106 ntBASIC3.09□□□□□ -1.91
RNF4P78317 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC3.09□□□□□ -1.91
RNF4P78317 SNORA22C-201ENST00000384614 134 ntBASIC3.09□□□□□ -1.91
RNF4P78317 RNU6-768P-201ENST00000384683 107 ntBASIC3.09□□□□□ -1.91
RNF4P78317 RNU6-376P-201ENST00000384731 106 ntBASIC3.09□□□□□ -1.91
RNF4P78317 SNORA40-201ENST00000388090 126 ntBASIC3.09□□□□□ -1.91
RNF4P78317 MTND4LP9-201ENST00000427694 174 ntBASIC3.09□□□□□ -1.91
RNF4P78317 AC091153.1-201ENST00000466297 402 ntBASIC3.09□□□□□ -1.91
RNF4P78317 RPL36AP21-201ENST00000490372 323 ntBASIC3.09□□□□□ -1.91
RNF4P78317 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
RNF4P78317 RNU6-313P-201ENST00000516317 112 ntBASIC3.09□□□□□ -1.91
RNF4P78317 AC112693.2-201ENST00000556538 232 ntBASIC3.09□□□□□ -1.91
RNF4P78317 AC007179.3-201ENST00000604976 235 ntBASIC3.09□□□□□ -1.91
RNF4P78317 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.92
RNF4P78317 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
RNF4P78317 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.08□□□□□ -1.92
RNF4P78317 RNU6-117P-201ENST00000365415 107 ntBASIC3.08□□□□□ -1.92
RNF4P78317 SNORD21-201ENST00000383953 95 ntBASIC3.08□□□□□ -1.92
RNF4P78317 Y_RNA.521-201ENST00000384560 114 ntBASIC3.08□□□□□ -1.92
RNF4P78317 RNA5SP293-201ENST00000410527 113 ntBASIC3.08□□□□□ -1.92
RNF4P78317 AC005326.1-201ENST00000429197 123 ntBASIC3.08□□□□□ -1.92
RNF4P78317 AC104332.2-201ENST00000429959 156 ntBASIC3.08□□□□□ -1.92
RNF4P78317 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.08□□□□□ -1.92
RNF4P78317 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.08□□□□□ -1.92
RNF4P78317 RNU6-479P-201ENST00000516348 105 ntBASIC3.08□□□□□ -1.92
RNF4P78317 RNU6-971P-201ENST00000516920 106 ntBASIC3.08□□□□□ -1.92
RNF4P78317 AC093732.2-201ENST00000607950 274 ntBASIC3.08□□□□□ -1.92
RNF4P78317 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.08□□□□□ -1.92
RNF4P78317 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
RNF4P78317 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
RNF4P78317 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
RNF4P78317 RNU6-1290P-201ENST00000362957 109 ntBASIC3.07□□□□□ -1.92
RNF4P78317 SNORD45.3-201ENST00000363836 72 ntBASIC3.07□□□□□ -1.92
RNF4P78317 SNORA70.4-201ENST00000365509 134 ntBASIC3.07□□□□□ -1.92
RNF4P78317 Y_RNA.420-201ENST00000384043 110 ntBASIC3.07□□□□□ -1.92
RNF4P78317 Y_RNA.587-201ENST00000391210 103 ntBASIC3.07□□□□□ -1.92
RNF4P78317 RNA5SP120-201ENST00000410900 112 ntBASIC3.07□□□□□ -1.92
RNF4P78317 CYCSP49-201ENST00000420810 319 ntBASIC3.07□□□□□ -1.92
RNF4P78317 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC3.07□□□□□ -1.92
RNF4P78317 AC025750.2-201ENST00000442609 450 ntBASIC3.07□□□□□ -1.92
RNF4P78317 snoU13.22-201ENST00000459428 104 ntBASIC3.07□□□□□ -1.92
RNF4P78317 RNU2-34P-201ENST00000516534 121 ntBASIC3.07□□□□□ -1.92
RNF4P78317 LARP7P3-201ENST00000579888 337 ntBASIC3.07□□□□□ -1.92
RNF4P78317 MIR3117-201ENST00000584034 78 ntBASIC3.07□□□□□ -1.92
RNF4P78317 MIR4438-201ENST00000585271 93 ntBASIC3.07□□□□□ -1.92
RNF4P78317 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.07□□□□□ -1.92
RNF4P78317 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.07□□□□□ -1.92
RNF4P78317 AC006435.5-201ENST00000624486 112 ntBASIC3.07□□□□□ -1.92
RNF4P78317 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.06□□□□□ -1.92
RNF4P78317 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
RNF4P78317 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
RNF4P78317 MIR30E-201ENST00000362104 92 ntBASIC3.06□□□□□ -1.92
RNF4P78317 RNU1-22P-201ENST00000363334 158 ntBASIC3.06□□□□□ -1.92
RNF4P78317 RNU6-735P-201ENST00000410612 107 ntBASIC3.06□□□□□ -1.92
RNF4P78317 RN7SKP123-201ENST00000410732 291 ntBASIC3.06□□□□□ -1.92
RNF4P78317 MTCO1P44-201ENST00000441935 243 ntBASIC3.06□□□□□ -1.92
RNF4P78317 CYP2C59P-201ENST00000457790 269 ntBASIC3.06□□□□□ -1.92
RNF4P78317 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.06□□□□□ -1.92
RNF4P78317 AL929325.1-201ENST00000603096 117 ntBASIC3.06□□□□□ -1.92
RNF4P78317 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
RNF4P78317 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.05□□□□□ -1.92
RNF4P78317 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
RNF4P78317 CENPCP1-201ENST00000533085 2578 ntBASIC3.05□□□□□ -1.92
RNF4P78317 RNU1-70P-201ENST00000362618 164 ntBASIC3.05□□□□□ -1.92
RNF4P78317 U8.9-201ENST00000365667 134 ntBASIC3.05□□□□□ -1.92
RNF4P78317 RNU6-1168P-201ENST00000390831 104 ntBASIC3.05□□□□□ -1.92
RNF4P78317 RNU6-460P-201ENST00000391158 108 ntBASIC3.05□□□□□ -1.92
RNF4P78317 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.05□□□□□ -1.92
RNF4P78317 RN7SL807P-201ENST00000470923 297 ntBASIC3.05□□□□□ -1.92
RNF4P78317 AC021205.2-201ENST00000480069 347 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms