Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 IGHVIII-44-202ENST00000636235 289 ntBASIC1.95□□□□□ -2.1
HOXA1P49639 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
HOXA1P49639 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
HOXA1P49639 Y_RNA.331-201ENST00000365267 102 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 Y_RNA.332-201ENST00000365271 113 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 RNU6-975P-201ENST00000384296 105 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 MIR1185-2-201ENST00000408687 86 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 RNA5SP338-201ENST00000410495 85 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 RNA5SP184-201ENST00000411071 108 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.94□□□□□ -2.1
HOXA1P49639 MTCO1P44-201ENST00000441935 243 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 MRPS10P1-201ENST00000448483 130 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.94□□□□□ -2.1
HOXA1P49639 RNU6-717P-201ENST00000459076 104 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.94□□□□□ -2.1
HOXA1P49639 RNU6-496P-201ENST00000516145 99 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 CYCSP23-201ENST00000519781 313 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.94□□□□□ -2.1
HOXA1P49639 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.94□□□□□ -2.1
HOXA1P49639 NDUFA5P6-201ENST00000542110 379 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 MIR3149-201ENST00000584629 83 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 AC012493.3-201ENST00000604494 112 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 U4atac.1-201ENST00000618345 95 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 AC006001.4-201ENST00000622243 395 ntBASIC1.94□□□□□ -2.1
HOXA1P49639 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.94□□□□□ -2.1
HOXA1P49639 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
HOXA1P49639 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.93□□□□□ -2.1
HOXA1P49639 SNORA3A-201ENST00000364113 130 ntBASIC1.93□□□□□ -2.1
HOXA1P49639 RNU6-21P-201ENST00000384710 107 ntBASIC1.93□□□□□ -2.1
HOXA1P49639 MIR27B-201ENST00000385129 97 ntBASIC1.93□□□□□ -2.1
HOXA1P49639 AC016909.1-201ENST00000415916 166 ntBASIC1.93□□□□□ -2.1
HOXA1P49639 AC123900.1-201ENST00000420390 96 ntBASIC1.93□□□□□ -2.1
HOXA1P49639 RNA5SP233-201ENST00000459153 113 ntBASIC1.93□□□□□ -2.1
HOXA1P49639 SCARNA24.2-201ENST00000516968 130 ntBASIC1.93□□□□□ -2.1
HOXA1P49639 DEFB108E-201ENST00000524692 240 ntBASIC1.93□□□□□ -2.1
HOXA1P49639 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.93□□□□□ -2.1
HOXA1P49639 GTF3AP2-201ENST00000557014 266 ntBASIC1.93□□□□□ -2.1
HOXA1P49639 MIR3200-201ENST00000580767 85 ntBASIC1.93□□□□□ -2.1
HOXA1P49639 AL590240.4-201ENST00000616908 390 ntBASIC1.93□□□□□ -2.1
HOXA1P49639 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.93□□□□□ -2.1
HOXA1P49639 snoZ196.1-201ENST00000625269 89 ntBASIC1.93□□□□□ -2.1
HOXA1P49639 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.93□□□□□ -2.1
HOXA1P49639 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
HOXA1P49639 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
HOXA1P49639 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
HOXA1P49639 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
HOXA1P49639 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
HOXA1P49639 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.93□□□□□ -2.1
HOXA1P49639 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.92□□□□□ -2.1
HOXA1P49639 RNU6-525P-201ENST00000363685 104 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 SNORD63-201ENST00000384262 68 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 Y_RNA.462-201ENST00000384268 102 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 Y_RNA.581-201ENST00000391017 97 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 NDUFB4P4-201ENST00000404822 243 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 MIR1302-6-201ENST00000408466 90 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 RNU6-1203P-201ENST00000410703 110 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 RNU2-38P-201ENST00000410856 79 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 RNU5A-5P-201ENST00000411054 116 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 TRBVB-201ENST00000477100 408 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 RNA5SP320-201ENST00000516263 124 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXA1P49639 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXA1P49639 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.92□□□□□ -2.1
HOXA1P49639 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXA1P49639 AC022441.3-201ENST00000605737 136 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.92□□□□□ -2.1
HOXA1P49639 AP001282.2-201ENST00000616149 309 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 SDR42E1P4-201ENST00000620894 481 ntBASIC1.92□□□□□ -2.1
HOXA1P49639 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
HOXA1P49639 MIR21-201ENST00000362134 72 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 Y_RNA.124-201ENST00000363339 93 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 Y_RNA.230-201ENST00000364348 109 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 Y_RNA.237-201ENST00000364439 102 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 MIR196B-201ENST00000384852 84 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 AC009963.1-201ENST00000417265 157 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC1.91□□□□□ -2.1
HOXA1P49639 TOMM22P2-201ENST00000430735 237 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 AC025750.2-201ENST00000442609 450 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 RNU6-1143P-201ENST00000516125 104 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 RNA5SP24-201ENST00000516478 95 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 RNU2-12P-201ENST00000517216 168 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 MIR3935-201ENST00000583472 104 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 DEFB117-201ENST00000602356 141 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 AC067747.1-201ENST00000608026 250 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 U4.1-201ENST00000620349 87 ntBASIC1.91□□□□□ -2.1
HOXA1P49639 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
HOXA1P49639 AC010615.1-201ENST00000594254 1764 ntBASIC1.9□□□□□ -2.1
HOXA1P49639 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
HOXA1P49639 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
HOXA1P49639 MIR410-201ENST00000362222 80 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 RNU6-324P-201ENST00000363957 106 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 RNU6-1164P-201ENST00000364428 107 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 Y_RNA.329-201ENST00000365209 107 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 Y_RNA.383-201ENST00000383855 97 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 Y_RNA.418-201ENST00000384029 102 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 Y_RNA.452-201ENST00000384202 108 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
HOXA1P49639 AL355796.1-201ENST00000406706 323 ntBASIC1.9□□□□□ -2.11
HOXA1P49639 MIR1302-3-201ENST00000408128 138 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 145.8 ms