Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 MIR3945-201ENST00000581853 98 ntBASIC1.93□□□□□ -2.1
MSH2P43246 VN1R91P-201ENST00000594377 169 ntBASIC1.93□□□□□ -2.1
MSH2P43246 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.93□□□□□ -2.1
MSH2P43246 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.93□□□□□ -2.1
MSH2P43246 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.93□□□□□ -2.1
MSH2P43246 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.93□□□□□ -2.1
MSH2P43246 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.93□□□□□ -2.1
MSH2P43246 ZNF72P-201ENST00000425869 1908 ntBASIC1.92□□□□□ -2.1
MSH2P43246 Y_RNA.813-201ENST00000364639 102 ntBASIC1.92□□□□□ -2.1
MSH2P43246 RNU6-1264P-201ENST00000383891 107 ntBASIC1.92□□□□□ -2.1
MSH2P43246 Y_RNA.394-201ENST00000383942 103 ntBASIC1.92□□□□□ -2.1
MSH2P43246 RNY1P14-201ENST00000384426 108 ntBASIC1.92□□□□□ -2.1
MSH2P43246 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
MSH2P43246 RNU2-20P-201ENST00000410425 191 ntBASIC1.92□□□□□ -2.1
MSH2P43246 AC016909.1-201ENST00000415916 166 ntBASIC1.92□□□□□ -2.1
MSH2P43246 TOMM22P2-201ENST00000430735 237 ntBASIC1.92□□□□□ -2.1
MSH2P43246 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.92□□□□□ -2.1
MSH2P43246 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.92□□□□□ -2.1
MSH2P43246 SNORA40.9-201ENST00000515895 93 ntBASIC1.92□□□□□ -2.1
MSH2P43246 RNU4-77P-201ENST00000516692 156 ntBASIC1.92□□□□□ -2.1
MSH2P43246 AC018448.1-201ENST00000552843 316 ntBASIC1.92□□□□□ -2.1
MSH2P43246 AC006600.1-201ENST00000572529 153 ntBASIC1.92□□□□□ -2.1
MSH2P43246 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.92□□□□□ -2.1
MSH2P43246 AL353149.1-201ENST00000610667 244 ntBASIC1.92□□□□□ -2.1
MSH2P43246 U2.15-201ENST00000611544 191 ntBASIC1.92□□□□□ -2.1
MSH2P43246 U2.16-201ENST00000613119 191 ntBASIC1.92□□□□□ -2.1
MSH2P43246 U2.12-201ENST00000613778 191 ntBASIC1.92□□□□□ -2.1
MSH2P43246 U2.20-201ENST00000613956 192 ntBASIC1.92□□□□□ -2.1
MSH2P43246 U2.9-201ENST00000615427 191 ntBASIC1.92□□□□□ -2.1
MSH2P43246 U2.11-201ENST00000616345 191 ntBASIC1.92□□□□□ -2.1
MSH2P43246 U2.2-201ENST00000616535 191 ntBASIC1.92□□□□□ -2.1
MSH2P43246 U2.3-201ENST00000617785 191 ntBASIC1.92□□□□□ -2.1
MSH2P43246 U2.19-201ENST00000618602 191 ntBASIC1.92□□□□□ -2.1
MSH2P43246 RNU2-1-201ENST00000618664 191 ntBASIC1.92□□□□□ -2.1
MSH2P43246 U2.6-201ENST00000619225 191 ntBASIC1.92□□□□□ -2.1
MSH2P43246 U2.5-201ENST00000619465 191 ntBASIC1.92□□□□□ -2.1
MSH2P43246 U2.10-201ENST00000620268 191 ntBASIC1.92□□□□□ -2.1
MSH2P43246 AC006001.4-201ENST00000622243 395 ntBASIC1.92□□□□□ -2.1
MSH2P43246 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
MSH2P43246 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.92□□□□□ -2.1
MSH2P43246 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
MSH2P43246 Y_RNA.39-201ENST00000362620 98 ntBASIC1.91□□□□□ -2.1
MSH2P43246 AL117342.1-201ENST00000404861 406 ntBASIC1.91□□□□□ -2.1
MSH2P43246 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.91□□□□□ -2.1
MSH2P43246 AC008134.1-201ENST00000420943 193 ntBASIC1.91□□□□□ -2.1
MSH2P43246 AL445646.1-201ENST00000431784 216 ntBASIC1.91□□□□□ -2.1
MSH2P43246 AC099677.2-201ENST00000436385 175 ntBASIC1.91□□□□□ -2.1
MSH2P43246 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.91□□□□□ -2.1
MSH2P43246 RNU1-41P-201ENST00000516161 162 ntBASIC1.91□□□□□ -2.1
MSH2P43246 RNU1-48P-201ENST00000516400 162 ntBASIC1.91□□□□□ -2.1
MSH2P43246 MIR5094-201ENST00000578766 85 ntBASIC1.91□□□□□ -2.1
MSH2P43246 AL606534.2-204ENST00000635008 178 ntBASIC1.91□□□□□ -2.1
MSH2P43246 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.91□□□□□ -2.1
MSH2P43246 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
MSH2P43246 AL356292.1-201ENST00000283110 373 ntBASIC1.9□□□□□ -2.11
MSH2P43246 RNU6-862P-201ENST00000362804 105 ntBASIC1.9□□□□□ -2.11
MSH2P43246 SNORA16.1-201ENST00000364597 132 ntBASIC1.9□□□□□ -2.11
MSH2P43246 RNU6-708P-201ENST00000384217 107 ntBASIC1.9□□□□□ -2.11
MSH2P43246 Y_RNA.498-201ENST00000384460 102 ntBASIC1.9□□□□□ -2.11
MSH2P43246 MTCO3P19-201ENST00000415864 321 ntBASIC1.9□□□□□ -2.11
MSH2P43246 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.9□□□□□ -2.11
MSH2P43246 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.9□□□□□ -2.11
MSH2P43246 RNU6-625P-201ENST00000459412 107 ntBASIC1.9□□□□□ -2.11
MSH2P43246 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.9□□□□□ -2.11
MSH2P43246 AC116312.1-201ENST00000606841 314 ntBASIC1.9□□□□□ -2.11
MSH2P43246 AC006157.1-201ENST00000611750 366 ntBASIC1.9□□□□□ -2.11
MSH2P43246 MIR338-201ENST00000636369 67 ntBASIC1.9□□□□□ -2.11
MSH2P43246 MIR410-201ENST00000362222 80 ntBASIC1.89□□□□□ -2.11
MSH2P43246 Y_RNA.27-201ENST00000362540 103 ntBASIC1.89□□□□□ -2.11
MSH2P43246 RNU6-1240P-201ENST00000365155 104 ntBASIC1.89□□□□□ -2.11
MSH2P43246 RNU6-926P-201ENST00000384075 107 ntBASIC1.89□□□□□ -2.11
MSH2P43246 Y_RNA.445-201ENST00000384168 102 ntBASIC1.89□□□□□ -2.11
MSH2P43246 SNORD78.2-201ENST00000391076 69 ntBASIC1.89□□□□□ -2.11
MSH2P43246 RAB28P5-201ENST00000427490 651 ntBASIC1.89□□□□□ -2.11
MSH2P43246 HMGN2P34-201ENST00000437647 269 ntBASIC1.89□□□□□ -2.11
MSH2P43246 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
MSH2P43246 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.89□□□□□ -2.11
MSH2P43246 FCF1P4-201ENST00000448326 183 ntBASIC1.89□□□□□ -2.11
MSH2P43246 AC010409.1-201ENST00000487382 476 ntBASIC1.89□□□□□ -2.11
MSH2P43246 RNU6-1146P-201ENST00000516282 102 ntBASIC1.89□□□□□ -2.11
MSH2P43246 RNU6-1012P-201ENST00000516606 109 ntBASIC1.89□□□□□ -2.11
MSH2P43246 SNORA31.17-201ENST00000516953 127 ntBASIC1.89□□□□□ -2.11
MSH2P43246 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.89□□□□□ -2.11
MSH2P43246 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.89□□□□□ -2.11
MSH2P43246 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.89□□□□□ -2.11
MSH2P43246 SUB1P4-201ENST00000566062 339 ntBASIC1.89□□□□□ -2.11
MSH2P43246 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.89□□□□□ -2.11
MSH2P43246 MIR5188-201ENST00000583467 113 ntBASIC1.89□□□□□ -2.11
MSH2P43246 AC010900.2-201ENST00000604508 210 ntBASIC1.89□□□□□ -2.11
MSH2P43246 SNORD58B-201ENST00000607313 66 ntBASIC1.89□□□□□ -2.11
MSH2P43246 AC007485.1-201ENST00000616755 206 ntBASIC1.89□□□□□ -2.11
MSH2P43246 AL138825.1-201ENST00000618587 192 ntBASIC1.89□□□□□ -2.11
MSH2P43246 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
MSH2P43246 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
MSH2P43246 Y_RNA.31-201ENST00000362574 102 ntBASIC1.88□□□□□ -2.11
MSH2P43246 snoU2-30.2-201ENST00000362805 70 ntBASIC1.88□□□□□ -2.11
MSH2P43246 RNU6-474P-201ENST00000384243 107 ntBASIC1.88□□□□□ -2.11
MSH2P43246 RNU6-308P-201ENST00000390957 107 ntBASIC1.88□□□□□ -2.11
MSH2P43246 RNU2-2P-201ENST00000410396 191 ntBASIC1.88□□□□□ -2.11
MSH2P43246 PMCHL1-202ENST00000423102 261 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 143 ms