Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 MIR1244-3-201ENST00000635744 85 ntBASIC1.54□□□□□ -2.16
VIMP08670 MIR1244-2-201ENST00000636449 85 ntBASIC1.54□□□□□ -2.16
VIMP08670 MIR1244-4-202ENST00000636813 85 ntBASIC1.54□□□□□ -2.16
VIMP08670 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
VIMP08670 MIR302D-201ENST00000362275 68 ntBASIC1.53□□□□□ -2.16
VIMP08670 RNU6-1145P-201ENST00000384246 107 ntBASIC1.53□□□□□ -2.16
VIMP08670 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.53□□□□□ -2.16
VIMP08670 RNU1-78P-201ENST00000391248 165 ntBASIC1.53□□□□□ -2.16
VIMP08670 RNU6-370P-201ENST00000411008 104 ntBASIC1.53□□□□□ -2.16
VIMP08670 ELOCP21-201ENST00000412558 336 ntBASIC1.53□□□□□ -2.16
VIMP08670 UBE2V1P7-201ENST00000446395 340 ntBASIC1.53□□□□□ -2.16
VIMP08670 RPS26P45-201ENST00000471748 340 ntBASIC1.53□□□□□ -2.16
VIMP08670 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.53□□□□□ -2.16
VIMP08670 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.53□□□□□ -2.16
VIMP08670 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.53□□□□□ -2.16
VIMP08670 AL929325.1-201ENST00000603096 117 ntBASIC1.53□□□□□ -2.16
VIMP08670 AC022217.4-201ENST00000604389 163 ntBASIC1.53□□□□□ -2.16
VIMP08670 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.53□□□□□ -2.17
VIMP08670 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.52□□□□□ -2.17
VIMP08670 RNU6-99P-201ENST00000364721 107 ntBASIC1.52□□□□□ -2.17
VIMP08670 SNORD1A-201ENST00000364968 72 ntBASIC1.52□□□□□ -2.17
VIMP08670 MIR194-1-201ENST00000384892 85 ntBASIC1.52□□□□□ -2.17
VIMP08670 SNORA40.18-201ENST00000391200 128 ntBASIC1.52□□□□□ -2.17
VIMP08670 AC010154.1-201ENST00000425857 269 ntBASIC1.52□□□□□ -2.17
VIMP08670 RBMX2P4-201ENST00000441256 376 ntBASIC1.52□□□□□ -2.17
VIMP08670 RPS29P23-201ENST00000458635 123 ntBASIC1.52□□□□□ -2.17
VIMP08670 RPS26P55-201ENST00000471178 356 ntBASIC1.52□□□□□ -2.17
VIMP08670 RPS29P21-201ENST00000496272 170 ntBASIC1.52□□□□□ -2.17
VIMP08670 RNU6-120P-201ENST00000516077 103 ntBASIC1.52□□□□□ -2.17
VIMP08670 CYCSP23-201ENST00000519781 313 ntBASIC1.52□□□□□ -2.17
VIMP08670 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.52□□□□□ -2.17
VIMP08670 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.52□□□□□ -2.17
VIMP08670 AC104260.1-201ENST00000616660 539 ntBASIC1.52□□□□□ -2.17
VIMP08670 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
VIMP08670 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.51□□□□□ -2.17
VIMP08670 RNU6-1304P-201ENST00000411374 106 ntBASIC1.51□□□□□ -2.17
VIMP08670 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.51□□□□□ -2.17
VIMP08670 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.51□□□□□ -2.17
VIMP08670 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.51□□□□□ -2.17
VIMP08670 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.51□□□□□ -2.17
VIMP08670 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.51□□□□□ -2.17
VIMP08670 RNU7-99P-201ENST00000516271 62 ntBASIC1.51□□□□□ -2.17
VIMP08670 SNORA31.10-201ENST00000516482 106 ntBASIC1.51□□□□□ -2.17
VIMP08670 SNORA20.3-201ENST00000516880 132 ntBASIC1.51□□□□□ -2.17
VIMP08670 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.51□□□□□ -2.17
VIMP08670 AC023157.2-201ENST00000540596 141 ntBASIC1.51□□□□□ -2.17
VIMP08670 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.51□□□□□ -2.17
VIMP08670 AC015688.6-201ENST00000577737 104 ntBASIC1.51□□□□□ -2.17
VIMP08670 MIR4255-201ENST00000579351 72 ntBASIC1.51□□□□□ -2.17
VIMP08670 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.51□□□□□ -2.17
VIMP08670 MIR4438-201ENST00000585271 93 ntBASIC1.51□□□□□ -2.17
VIMP08670 PRR13P7-201ENST00000605538 430 ntBASIC1.51□□□□□ -2.17
VIMP08670 MIR8081-201ENST00000611533 95 ntBASIC1.51□□□□□ -2.17
VIMP08670 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.51□□□□□ -2.17
VIMP08670 AC099654.14-201ENST00000638599 341 ntBASIC1.51□□□□□ -2.17
VIMP08670 AC006026.1-201ENST00000444025 1803 ntBASIC1.51□□□□□ -2.17
VIMP08670 RNU6-1188P-201ENST00000363795 107 ntBASIC1.5□□□□□ -2.17
VIMP08670 RNU6-1264P-201ENST00000383891 107 ntBASIC1.5□□□□□ -2.17
VIMP08670 Y_RNA.390-201ENST00000383932 102 ntBASIC1.5□□□□□ -2.17
VIMP08670 RNU6-318P-201ENST00000384283 103 ntBASIC1.5□□□□□ -2.17
VIMP08670 Y_RNA.646-201ENST00000410980 101 ntBASIC1.5□□□□□ -2.17
VIMP08670 AC138393.2-201ENST00000414742 246 ntBASIC1.5□□□□□ -2.17
VIMP08670 AC098614.3-201ENST00000438957 440 ntBASIC1.5□□□□□ -2.17
VIMP08670 MRPS10P1-201ENST00000448483 130 ntBASIC1.5□□□□□ -2.17
VIMP08670 RPS27P22-201ENST00000478056 241 ntBASIC1.5□□□□□ -2.17
VIMP08670 AC010469.2-201ENST00000496412 480 ntBASIC1.5□□□□□ -2.17
VIMP08670 PRDX4P1-201ENST00000507189 574 ntBASIC1.5□□□□□ -2.17
VIMP08670 AC010598.1-201ENST00000510378 103 ntBASIC1.5□□□□□ -2.17
VIMP08670 RNA5SP61-201ENST00000516453 100 ntBASIC1.5□□□□□ -2.17
VIMP08670 SNORA25.15-201ENST00000516487 89 ntBASIC1.5□□□□□ -2.17
VIMP08670 AC019176.1-201ENST00000518519 225 ntBASIC1.5□□□□□ -2.17
VIMP08670 AL442163.3-201ENST00000554110 156 ntBASIC1.5□□□□□ -2.17
VIMP08670 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.5□□□□□ -2.17
VIMP08670 MIR26B-201ENST00000362251 77 ntBASIC1.49□□□□□ -2.17
VIMP08670 RNU6-310P-201ENST00000384655 107 ntBASIC1.49□□□□□ -2.17
VIMP08670 MIR517C-201ENST00000385103 95 ntBASIC1.49□□□□□ -2.17
VIMP08670 AC004965.1-201ENST00000413033 213 ntBASIC1.49□□□□□ -2.17
VIMP08670 RPL30P13-201ENST00000418873 348 ntBASIC1.49□□□□□ -2.17
VIMP08670 AC245047.3-201ENST00000429428 127 ntBASIC1.49□□□□□ -2.17
VIMP08670 PCNPP5-201ENST00000452246 481 ntBASIC1.49□□□□□ -2.17
VIMP08670 MIR2053-201ENST00000459295 91 ntBASIC1.49□□□□□ -2.17
VIMP08670 AC099513.1-201ENST00000490423 301 ntBASIC1.49□□□□□ -2.17
VIMP08670 AC079140.2-201ENST00000506193 142 ntBASIC1.49□□□□□ -2.17
VIMP08670 AC074133.1-201ENST00000515696 183 ntBASIC1.49□□□□□ -2.17
VIMP08670 RNA5SP445-201ENST00000515889 115 ntBASIC1.49□□□□□ -2.17
VIMP08670 RN7SKP49-201ENST00000516675 260 ntBASIC1.49□□□□□ -2.17
VIMP08670 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.49□□□□□ -2.17
VIMP08670 AC018448.1-201ENST00000552843 316 ntBASIC1.49□□□□□ -2.17
VIMP08670 AC008269.2-201ENST00000561915 1105 ntBASIC1.49□□□□□ -2.17
VIMP08670 SUB1P3-201ENST00000564581 315 ntBASIC1.49□□□□□ -2.17
VIMP08670 SNORD53B-201ENST00000577887 78 ntBASIC1.49□□□□□ -2.17
VIMP08670 BX248123.2-201ENST00000606318 124 ntBASIC1.49□□□□□ -2.17
VIMP08670 AL355073.2-201ENST00000612106 557 ntBASIC1.49□□□□□ -2.17
VIMP08670 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.49□□□□□ -2.17
VIMP08670 MIR8054-201ENST00000620877 86 ntBASIC1.49□□□□□ -2.17
VIMP08670 AC006435.5-201ENST00000624486 112 ntBASIC1.49□□□□□ -2.17
VIMP08670 AC073544.1-201ENST00000600110 1595 ntBASIC1.49□□□□□ -2.17
VIMP08670 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.49□□□□□ -2.17
VIMP08670 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.48□□□□□ -2.17
VIMP08670 SNORA20B-201ENST00000384220 132 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms