Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC090115.4-201ENST00000609970 188 ntBASIC2.85□□□□□ -1.95
CBX4O00257 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
CBX4O00257 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.85□□□□□ -1.95
CBX4O00257 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.85□□□□□ -1.95
CBX4O00257 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.85□□□□□ -1.95
CBX4O00257 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
CBX4O00257 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CBX4O00257 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CBX4O00257 SNORD114-7-201ENST00000362520 77 ntBASIC2.84□□□□□ -1.95
CBX4O00257 RNY1-201ENST00000364228 113 ntBASIC2.84□□□□□ -1.95
CBX4O00257 RNU6-662P-201ENST00000384253 104 ntBASIC2.84□□□□□ -1.95
CBX4O00257 RNU6-907P-201ENST00000390924 102 ntBASIC2.84□□□□□ -1.95
CBX4O00257 MIR873-201ENST00000401120 77 ntBASIC2.84□□□□□ -1.95
CBX4O00257 AL451074.5-201ENST00000415894 435 ntBASIC2.84□□□□□ -1.95
CBX4O00257 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.84□□□□□ -1.95
CBX4O00257 MTCO1P44-201ENST00000441935 243 ntBASIC2.84□□□□□ -1.95
CBX4O00257 PRELID3BP1-201ENST00000457142 540 ntBASIC2.84□□□□□ -1.95
CBX4O00257 RNU7-26P-201ENST00000458980 63 ntBASIC2.84□□□□□ -1.95
CBX4O00257 AC010598.1-201ENST00000510378 103 ntBASIC2.84□□□□□ -1.95
CBX4O00257 AC025647.1-201ENST00000517879 253 ntBASIC2.84□□□□□ -1.95
CBX4O00257 NDUFA5P6-201ENST00000542110 379 ntBASIC2.84□□□□□ -1.95
CBX4O00257 AC009127.3-201ENST00000570531 403 ntBASIC2.84□□□□□ -1.95
CBX4O00257 MIR4643-201ENST00000577473 78 ntBASIC2.84□□□□□ -1.95
CBX4O00257 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
CBX4O00257 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.84□□□□□ -1.96
CBX4O00257 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.84□□□□□ -1.96
CBX4O00257 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.84□□□□□ -1.96
CBX4O00257 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.96
CBX4O00257 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.83□□□□□ -1.96
CBX4O00257 SNORA38-201ENST00000363946 132 ntBASIC2.83□□□□□ -1.96
CBX4O00257 RNU6-1240P-201ENST00000365155 104 ntBASIC2.83□□□□□ -1.96
CBX4O00257 Y_RNA.361-201ENST00000365515 120 ntBASIC2.83□□□□□ -1.96
CBX4O00257 SNORA20B-201ENST00000384220 132 ntBASIC2.83□□□□□ -1.96
CBX4O00257 AL138827.1-201ENST00000402666 306 ntBASIC2.83□□□□□ -1.96
CBX4O00257 MIR1261-201ENST00000408659 82 ntBASIC2.83□□□□□ -1.96
CBX4O00257 SNORD109B-201ENST00000458961 67 ntBASIC2.83□□□□□ -1.96
CBX4O00257 SNORD109A-201ENST00000459128 67 ntBASIC2.83□□□□□ -1.96
CBX4O00257 AC003982.1-202ENST00000469928 248 ntBASIC2.83□□□□□ -1.96
CBX4O00257 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.83□□□□□ -1.96
CBX4O00257 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.83□□□□□ -1.96
CBX4O00257 SNORA31.26-201ENST00000517250 137 ntBASIC2.83□□□□□ -1.96
CBX4O00257 AC007536.1-201ENST00000533382 349 ntBASIC2.83□□□□□ -1.96
CBX4O00257 AC104984.5-201ENST00000586878 94 ntBASIC2.83□□□□□ -1.96
CBX4O00257 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.83□□□□□ -1.96
CBX4O00257 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
CBX4O00257 AL161431.1-201ENST00000618966 4205 ntBASIC2.82□□□□□ -1.96
CBX4O00257 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CBX4O00257 Y_RNA.82-201ENST00000363000 102 ntBASIC2.82□□□□□ -1.96
CBX4O00257 Y_RNA.92-201ENST00000363043 102 ntBASIC2.82□□□□□ -1.96
CBX4O00257 Y_RNA.117-201ENST00000363294 101 ntBASIC2.82□□□□□ -1.96
CBX4O00257 RNU1-112P-201ENST00000364401 164 ntBASIC2.82□□□□□ -1.96
CBX4O00257 Y_RNA.235-201ENST00000364412 102 ntBASIC2.82□□□□□ -1.96
CBX4O00257 RNU6-200P-201ENST00000364743 107 ntBASIC2.82□□□□□ -1.96
CBX4O00257 Y_RNA.306-201ENST00000365015 102 ntBASIC2.82□□□□□ -1.96
CBX4O00257 Y_RNA.312-201ENST00000365089 102 ntBASIC2.82□□□□□ -1.96
CBX4O00257 Y_RNA.322-201ENST00000365151 102 ntBASIC2.82□□□□□ -1.96
CBX4O00257 MIR196B-201ENST00000384852 84 ntBASIC2.82□□□□□ -1.96
CBX4O00257 RNU6-855P-201ENST00000410395 104 ntBASIC2.82□□□□□ -1.96
CBX4O00257 EDDM3CP-201ENST00000415977 425 ntBASIC2.82□□□□□ -1.96
CBX4O00257 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.82□□□□□ -1.96
CBX4O00257 Y_RNA.650-201ENST00000459002 102 ntBASIC2.82□□□□□ -1.96
CBX4O00257 SNORD65B-201ENST00000459126 73 ntBASIC2.82□□□□□ -1.96
CBX4O00257 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.82□□□□□ -1.96
CBX4O00257 Y_RNA.777-201ENST00000516982 102 ntBASIC2.82□□□□□ -1.96
CBX4O00257 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.82□□□□□ -1.96
CBX4O00257 Y_RNA.771-201ENST00000598668 102 ntBASIC2.82□□□□□ -1.96
CBX4O00257 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.82□□□□□ -1.96
CBX4O00257 Y_RNA.789-201ENST00000622480 102 ntBASIC2.82□□□□□ -1.96
CBX4O00257 AC006435.5-201ENST00000624486 112 ntBASIC2.82□□□□□ -1.96
CBX4O00257 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CBX4O00257 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.82□□□□□ -1.96
CBX4O00257 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CBX4O00257 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CBX4O00257 MIR26A1-201ENST00000362205 77 ntBASIC2.81□□□□□ -1.96
CBX4O00257 Y_RNA.99-201ENST00000363138 105 ntBASIC2.81□□□□□ -1.96
CBX4O00257 Y_RNA.122-201ENST00000363331 96 ntBASIC2.81□□□□□ -1.96
CBX4O00257 Y_RNA.200-201ENST00000364018 102 ntBASIC2.81□□□□□ -1.96
CBX4O00257 Y_RNA.217-201ENST00000364214 105 ntBASIC2.81□□□□□ -1.96
CBX4O00257 AC063976.3-201ENST00000426849 329 ntBASIC2.81□□□□□ -1.96
CBX4O00257 AL121890.1-201ENST00000435457 205 ntBASIC2.81□□□□□ -1.96
CBX4O00257 AC245102.2-201ENST00000448956 180 ntBASIC2.81□□□□□ -1.96
CBX4O00257 Y_RNA.641-201ENST00000459414 105 ntBASIC2.81□□□□□ -1.96
CBX4O00257 RNU6-856P-201ENST00000516959 98 ntBASIC2.81□□□□□ -1.96
CBX4O00257 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.81□□□□□ -1.96
CBX4O00257 AC091544.4-201ENST00000555268 342 ntBASIC2.81□□□□□ -1.96
CBX4O00257 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.81□□□□□ -1.96
CBX4O00257 AC026271.5-201ENST00000577873 130 ntBASIC2.81□□□□□ -1.96
CBX4O00257 MIR4435-1-201ENST00000582552 80 ntBASIC2.81□□□□□ -1.96
CBX4O00257 AL442067.1-201ENST00000613261 223 ntBASIC2.81□□□□□ -1.96
CBX4O00257 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.81□□□□□ -1.96
CBX4O00257 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.81□□□□□ -1.96
CBX4O00257 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CBX4O00257 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.8□□□□□ -1.96
CBX4O00257 AL159152.1-201ENST00000635019 2587 ntBASIC2.8□□□□□ -1.96
CBX4O00257 RNA5SP432-201ENST00000362480 116 ntBASIC2.8□□□□□ -1.96
CBX4O00257 SNORA27.1-201ENST00000362604 124 ntBASIC2.8□□□□□ -1.96
CBX4O00257 RNU6-1272P-201ENST00000362776 107 ntBASIC2.8□□□□□ -1.96
CBX4O00257 RNU6-407P-201ENST00000365280 104 ntBASIC2.8□□□□□ -1.96
CBX4O00257 U8.9-201ENST00000365667 134 ntBASIC2.8□□□□□ -1.96
CBX4O00257 AL355796.1-201ENST00000406706 323 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 140.8 ms