Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RPL21P10-201ENST00000463521 490 ntBASIC3.72□□□□□ -1.81
USP3Q9Y6I4 MIR2114-201ENST00000516645 80 ntBASIC3.72□□□□□ -1.81
USP3Q9Y6I4 MIR4738-201ENST00000579134 87 ntBASIC3.72□□□□□ -1.81
USP3Q9Y6I4 AC110741.2-201ENST00000605278 268 ntBASIC3.72□□□□□ -1.81
USP3Q9Y6I4 U3.45-201ENST00000607547 219 ntBASIC3.72□□□□□ -1.81
USP3Q9Y6I4 MIR92B-201ENST00000607575 96 ntBASIC3.72□□□□□ -1.81
USP3Q9Y6I4 AC013412.1-201ENST00000610687 192 ntBASIC3.72□□□□□ -1.81
USP3Q9Y6I4 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP3Q9Y6I4 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.71□□□□□ -1.81
USP3Q9Y6I4 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.81
USP3Q9Y6I4 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
USP3Q9Y6I4 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
USP3Q9Y6I4 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
USP3Q9Y6I4 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
USP3Q9Y6I4 AL355596.1-201ENST00000565399 3996 ntBASIC3.71□□□□□ -1.82
USP3Q9Y6I4 Y_RNA.91-201ENST00000363042 107 ntBASIC3.71□□□□□ -1.82
USP3Q9Y6I4 Y_RNA.242-201ENST00000364473 110 ntBASIC3.71□□□□□ -1.82
USP3Q9Y6I4 MIRLET7F2-201ENST00000385277 83 ntBASIC3.71□□□□□ -1.82
USP3Q9Y6I4 AC093578.1-201ENST00000415219 368 ntBASIC3.71□□□□□ -1.82
USP3Q9Y6I4 RPS4XP11-201ENST00000446897 772 ntBASIC3.71□□□□□ -1.82
USP3Q9Y6I4 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.71□□□□□ -1.82
USP3Q9Y6I4 RN7SL594P-201ENST00000470590 287 ntBASIC3.71□□□□□ -1.82
USP3Q9Y6I4 RN7SL293P-201ENST00000481765 281 ntBASIC3.71□□□□□ -1.82
USP3Q9Y6I4 RN7SKP19-201ENST00000516016 252 ntBASIC3.71□□□□□ -1.82
USP3Q9Y6I4 MIR4438-201ENST00000585271 93 ntBASIC3.71□□□□□ -1.82
USP3Q9Y6I4 AC006254.2-201ENST00000603259 279 ntBASIC3.71□□□□□ -1.82
USP3Q9Y6I4 JPX_2.1-201ENST00000614161 69 ntBASIC3.71□□□□□ -1.82
USP3Q9Y6I4 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC3.71□□□□□ -1.82
USP3Q9Y6I4 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
USP3Q9Y6I4 MFSD8-233ENST00000641482 4860 ntBASIC3.71□□□□□ -1.82
USP3Q9Y6I4 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
USP3Q9Y6I4 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.7□□□□□ -1.82
USP3Q9Y6I4 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.7□□□□□ -1.82
USP3Q9Y6I4 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
USP3Q9Y6I4 Y_RNA.796-201ENST00000364268 102 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 Y_RNA.799-201ENST00000364992 102 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 MIR183-201ENST00000384958 110 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 MIR891A-201ENST00000401237 79 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 AC016909.1-201ENST00000415916 166 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 MICF-203ENST00000432679 129 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 SNRPGP3-201ENST00000469405 227 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 RNU6-168P-201ENST00000516189 101 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 SNORA70.14-201ENST00000516205 110 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 RNU6-365P-201ENST00000517113 106 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 RNU7-172P-201ENST00000517125 64 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.7□□□□□ -1.82
USP3Q9Y6I4 AC090115.4-201ENST00000609970 188 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 U4.6-201ENST00000621618 127 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
USP3Q9Y6I4 AC058791.1-201ENST00000608412 3198 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 AL356274.2-201ENST00000624379 3752 ntBASIC3.7□□□□□ -1.82
USP3Q9Y6I4 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
USP3Q9Y6I4 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.7□□□□□ -1.82
USP3Q9Y6I4 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
USP3Q9Y6I4 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.69□□□□□ -1.82
USP3Q9Y6I4 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
USP3Q9Y6I4 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
USP3Q9Y6I4 RNU6-1209P-201ENST00000363655 107 ntBASIC3.69□□□□□ -1.82
USP3Q9Y6I4 RNU6-418P-201ENST00000384035 107 ntBASIC3.69□□□□□ -1.82
USP3Q9Y6I4 MIR520G-201ENST00000385064 90 ntBASIC3.69□□□□□ -1.82
USP3Q9Y6I4 RN7SKP111-201ENST00000410349 271 ntBASIC3.69□□□□□ -1.82
USP3Q9Y6I4 Y_RNA.630-201ENST00000411370 108 ntBASIC3.69□□□□□ -1.82
USP3Q9Y6I4 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.69□□□□□ -1.82
USP3Q9Y6I4 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.69□□□□□ -1.82
USP3Q9Y6I4 RNU7-149P-201ENST00000516739 59 ntBASIC3.69□□□□□ -1.82
USP3Q9Y6I4 RNU2-60P-201ENST00000517290 128 ntBASIC3.69□□□□□ -1.82
USP3Q9Y6I4 AC011604.1-201ENST00000545978 196 ntBASIC3.69□□□□□ -1.82
USP3Q9Y6I4 Pinc.1-201ENST00000616452 154 ntBASIC3.69□□□□□ -1.82
USP3Q9Y6I4 MIR7157-201ENST00000635801 60 ntBASIC3.69□□□□□ -1.82
USP3Q9Y6I4 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
USP3Q9Y6I4 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.69□□□□□ -1.82
USP3Q9Y6I4 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.69□□□□□ -1.82
USP3Q9Y6I4 AC103988.1-201ENST00000566382 2177 ntBASIC3.69□□□□□ -1.82
USP3Q9Y6I4 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
USP3Q9Y6I4 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
USP3Q9Y6I4 CEP170P1-201ENST00000502249 4587 ntBASIC3.68□□□□□ -1.82
USP3Q9Y6I4 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
USP3Q9Y6I4 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.68□□□□□ -1.82
USP3Q9Y6I4 Y_RNA.35-201ENST00000362601 101 ntBASIC3.68□□□□□ -1.82
USP3Q9Y6I4 Y_RNA.52-201ENST00000362760 96 ntBASIC3.68□□□□□ -1.82
USP3Q9Y6I4 SNORD17-201ENST00000390930 237 ntBASIC3.68□□□□□ -1.82
USP3Q9Y6I4 RNU2-27P-201ENST00000516185 142 ntBASIC3.68□□□□□ -1.82
USP3Q9Y6I4 RNU6-412P-201ENST00000516434 106 ntBASIC3.68□□□□□ -1.82
USP3Q9Y6I4 AC012531.5-201ENST00000611375 151 ntBASIC3.68□□□□□ -1.82
USP3Q9Y6I4 AC025166.1-201ENST00000612411 163 ntBASIC3.68□□□□□ -1.82
USP3Q9Y6I4 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.68□□□□□ -1.82
USP3Q9Y6I4 U6.105-201ENST00000637379 88 ntBASIC3.68□□□□□ -1.82
USP3Q9Y6I4 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
USP3Q9Y6I4 AC068647.1-201ENST00000489539 2265 ntBASIC3.68□□□□□ -1.82
USP3Q9Y6I4 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
USP3Q9Y6I4 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.67□□□□□ -1.82
USP3Q9Y6I4 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.67□□□□□ -1.82
USP3Q9Y6I4 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
USP3Q9Y6I4 RNU6-1164P-201ENST00000364428 107 ntBASIC3.67□□□□□ -1.82
USP3Q9Y6I4 MIR7-3-201ENST00000384898 110 ntBASIC3.67□□□□□ -1.82
USP3Q9Y6I4 AL031121.1-201ENST00000406553 254 ntBASIC3.67□□□□□ -1.82
USP3Q9Y6I4 RNA5SP89-201ENST00000410300 108 ntBASIC3.67□□□□□ -1.82
USP3Q9Y6I4 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.67□□□□□ -1.82
USP3Q9Y6I4 Y_RNA.649-201ENST00000459077 103 ntBASIC3.67□□□□□ -1.82
USP3Q9Y6I4 AC093663.1-201ENST00000497190 394 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms